diff options
| author | pxz <[email protected]> | 2020-08-25 14:12:40 +0800 |
|---|---|---|
| committer | pxz <[email protected]> | 2020-08-25 14:12:40 +0800 |
| commit | 31dafcf2bf8b8db895e792e141b401a5b3e73ff5 (patch) | |
| tree | ef4023794fadd92de11a1dded64f880ff0ceb80c /example | |
| parent | 3cc9cf7915317579b7aaed7a326e9bca54c39082 (diff) | |
update
Diffstat (limited to 'example')
120 files changed, 7198 insertions, 0 deletions
diff --git a/example/luatest/CMakeLists.txt b/example/luatest/CMakeLists.txt new file mode 100644 index 0000000..feb0934 --- /dev/null +++ b/example/luatest/CMakeLists.txt @@ -0,0 +1,18 @@ +cmake_minimum_required(VERSION 3.5) +project (luatest) + +include_directories("/usr/local/include/gperftools") +include_directories("../../include") +link_directories("/root/workspace/tsg_lua_0.99/lib") +link_libraries(tsglua pthread dl tcmalloc) + +add_definitions(-g -W -Wall -O0 -rdynamic) + +#add_executable(../single_thread single_thread.cpp) +#add_executable(../multithread multithread.cpp) +#target_link_libraries(single_thread tsglua) +#target_link_libraries(multithread tsglua) + +add_executable(luatest luatest.cpp) +target_link_libraries(luatest pcap tsglua pthread dl) + diff --git a/example/luatest/conf/default.conf b/example/luatest/conf/default.conf new file mode 100644 index 0000000..ce3ce46 --- /dev/null +++ b/example/luatest/conf/default.conf @@ -0,0 +1,8 @@ +#file_type 1:text_file 2:pcap_file +thread_num 1 +feature weixinnum +lib ./lib/libc_handle_weixinnum.so +script ./script/handle_weixinnum.lua +input ./pcap/test.pcap +file_type 2 + diff --git a/example/luatest/conf/fasta.conf b/example/luatest/conf/fasta.conf new file mode 100644 index 0000000..1f44c30 --- /dev/null +++ b/example/luatest/conf/fasta.conf @@ -0,0 +1,16 @@ +#fasta find G +/* +thread_num 1 +feature GGsCGG +input ./pcap/test.fasta +lib ./lib/libhandle_fasta_find.so +script ./script/handle_fasta_find.lua +*/ + +#fasta find q +thread_num 1 +feature hAATCGCTT +input ./fasta/q_once.fasta +lib ./lib/libhandle_fasta_count.so +script ./script/handle_fasta_count.lua +file_type 1 diff --git a/example/luatest/fasta/GGG.fasta b/example/luatest/fasta/GGG.fasta new file mode 100644 index 0000000..f1caba0 --- /dev/null +++ b/example/luatest/fasta/GGG.fasta @@ -0,0 +1,171 @@ +>ONE Homo sapiens alu +GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGA +TCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACT +AAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAG +GCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCG +CCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGT +GGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCA +GGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAA +TTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAG +AATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCA +GCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGT +AATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGACC +AGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTG +GTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACC +CGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAG +AGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTT +TGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACA +TGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCT +GTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGG +TTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGT +CTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGG +CGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCG +TCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTA +CTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCG +AGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCG +GGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACC +TGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAA +TACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGA +GGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACT +GCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTC +ACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGT +TCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGC +CGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCG +CTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTG +GGCGACAGAGCGAGACTCCG +>TWO IUB ambiguity codes +cttBtatcatatgctaKggNcataaaSatgtaaaDcDRtBggDtctttataattcBgtcg +tactDtDagcctatttSVHtHttKtgtHMaSattgWaHKHttttagacatWatgtRgaaa +NtactMcSMtYtcMgRtacttctWBacgaaatatagScDtttgaagacacatagtVgYgt +cattHWtMMWcStgttaggKtSgaYaaccWStcgBttgcgaMttBYatcWtgacaYcaga +gtaBDtRacttttcWatMttDBcatWtatcttactaBgaYtcttgttttttttYaaScYa +HgtgttNtSatcMtcVaaaStccRcctDaataataStcYtRDSaMtDttgttSagtRRca +tttHatSttMtWgtcgtatSSagactYaaattcaMtWatttaSgYttaRgKaRtccactt +tattRggaMcDaWaWagttttgacatgttctacaaaRaatataataaMttcgDacgaSSt +acaStYRctVaNMtMgtaggcKatcttttattaaaaagVWaHKYagtttttatttaacct +tacgtVtcVaattVMBcttaMtttaStgacttagattWWacVtgWYagWVRctDattBYt +gtttaagaagattattgacVatMaacattVctgtBSgaVtgWWggaKHaatKWcBScSWa +accRVacacaaactaccScattRatatKVtactatatttHttaagtttSKtRtacaaagt +RDttcaaaaWgcacatWaDgtDKacgaacaattacaRNWaatHtttStgttattaaMtgt +tgDcgtMgcatBtgcttcgcgaDWgagctgcgaggggVtaaScNatttacttaatgacag +cccccacatYScaMgtaggtYaNgttctgaMaacNaMRaacaaacaKctacatagYWctg +ttWaaataaaataRattagHacacaagcgKatacBttRttaagtatttccgatctHSaat +actcNttMaagtattMtgRtgaMgcataatHcMtaBSaRattagttgatHtMttaaKagg +YtaaBataSaVatactWtataVWgKgttaaaacagtgcgRatatacatVtHRtVYataSa +KtWaStVcNKHKttactatccctcatgWHatWaRcttactaggatctataDtDHBttata +aaaHgtacVtagaYttYaKcctattcttcttaataNDaaggaaaDYgcggctaaWSctBa +aNtgctggMBaKctaMVKagBaactaWaDaMaccYVtNtaHtVWtKgRtcaaNtYaNacg +gtttNattgVtttctgtBaWgtaattcaagtcaVWtactNggattctttaYtaaagccgc +tcttagHVggaYtgtNcDaVagctctctKgacgtatagYcctRYHDtgBattDaaDgccK +tcHaaStttMcctagtattgcRgWBaVatHaaaataYtgtttagMDMRtaataaggatMt +ttctWgtNtgtgaaaaMaatatRtttMtDgHHtgtcattttcWattRSHcVagaagtacg +ggtaKVattKYagactNaatgtttgKMMgYNtcccgSKttctaStatatNVataYHgtNa +BKRgNacaactgatttcctttaNcgatttctctataScaHtataRagtcRVttacDSDtt +aRtSatacHgtSKacYagttMHtWataggatgactNtatSaNctataVtttRNKtgRacc +tttYtatgttactttttcctttaaacatacaHactMacacggtWataMtBVacRaSaatc +cgtaBVttccagccBcttaRKtgtgcctttttRtgtcagcRttKtaaacKtaaatctcac +aattgcaNtSBaaccgggttattaaBcKatDagttactcttcattVtttHaaggctKKga +tacatcBggScagtVcacattttgaHaDSgHatRMaHWggtatatRgccDttcgtatcga +aacaHtaagttaRatgaVacttagattVKtaaYttaaatcaNatccRttRRaMScNaaaD +gttVHWgtcHaaHgacVaWtgttScactaagSgttatcttagggDtaccagWattWtRtg +ttHWHacgattBtgVcaYatcggttgagKcWtKKcaVtgaYgWctgYggVctgtHgaNcV +taBtWaaYatcDRaaRtSctgaHaYRttagatMatgcatttNattaDttaattgttctaa +ccctcccctagaWBtttHtBccttagaVaatMcBHagaVcWcagBVttcBtaYMccagat +gaaaaHctctaacgttagNWRtcggattNatcRaNHttcagtKttttgWatWttcSaNgg +gaWtactKKMaacatKatacNattgctWtatctaVgagctatgtRaHtYcWcttagccaa +tYttWttaWSSttaHcaaaaagVacVgtaVaRMgattaVcDactttcHHggHRtgNcctt +tYatcatKgctcctctatVcaaaaKaaaagtatatctgMtWtaaaacaStttMtcgactt +taSatcgDataaactaaacaagtaaVctaggaSccaatMVtaaSKNVattttgHccatca +cBVctgcaVatVttRtactgtVcaattHgtaaattaaattttYtatattaaRSgYtgBag +aHSBDgtagcacRHtYcBgtcacttacactaYcgctWtattgSHtSatcataaatataHt +cgtYaaMNgBaatttaRgaMaatatttBtttaaaHHKaatctgatWatYaacttMctctt +ttVctagctDaaagtaVaKaKRtaacBgtatccaaccactHHaagaagaaggaNaaatBW +attccgStaMSaMatBttgcatgRSacgttVVtaaDMtcSgVatWcaSatcttttVatag +ttactttacgatcaccNtaDVgSRcgVcgtgaacgaNtaNatatagtHtMgtHcMtagaa +attBgtataRaaaacaYKgtRccYtatgaagtaataKgtaaMttgaaRVatgcagaKStc +tHNaaatctBBtcttaYaBWHgtVtgacagcaRcataWctcaBcYacYgatDgtDHccta +>THREE Homo sapiens frequency +aacacttcaccaggtatcgtgaaggctcaagattacccagagaacctttgcaatataaga +atatgtatgcagcattaccctaagtaattatattctttttctgactcaaagtgacaagcc +ctagtgtatattaaatcggtatatttgggaaattcctcaaactatcctaatcaggtagcc +atgaaagtgatcaaaaaagttcgtacttataccatacatgaattctggccaagtaaaaaa +tagattgcgcaaaattcgtaccttaagtctctcgccaagatattaggatcctattactca +tatcgtgtttttctttattgccgccatccccggagtatctcacccatccttctcttaaag +gcctaatattacctatgcaaataaacatatattgttgaaaattgagaacctgatcgtgat +tcttatgtgtaccatatgtatagtaatcacgcgactatatagtgctttagtatcgcccgt +gggtgagtgaatattctgggctagcgtgagatagtttcttgtcctaatatttttcagatc +gaatagcttctatttttgtgtttattgacatatgtcgaaactccttactcagtgaaagtc +atgaccagatccacgaacaatcttcggaatcagtctcgttttacggcggaatcttgagtc +taacttatatcccgtcgcttactttctaacaccccttatgtatttttaaaattacgttta +ttcgaacgtacttggcggaagcgttattttttgaagtaagttacattgggcagactcttg +acattttcgatacgactttctttcatccatcacaggactcgttcgtattgatatcagaag +ctcgtgatgattagttgtcttctttaccaatactttgaggcctattctgcgaaatttttg +ttgccctgcgaacttcacataccaaggaacacctcgcaacatgccttcatatccatcgtt +cattgtaattcttacacaatgaatcctaagtaattacatccctgcgtaaaagatggtagg +ggcactgaggatatattaccaagcatttagttatgagtaatcagcaatgtttcttgtatt +aagttctctaaaatagttacatcgtaatgttatctcgggttccgcgaataaacgagatag +attcattatatatggccctaagcaaaaacctcctcgtattctgttggtaattagaatcac +acaatacgggttgagatattaattatttgtagtacgaagagatataaaaagatgaacaat +tactcaagtcaagatgtatacgggatttataataaaaatcgggtagagatctgctttgca +attcagacgtgccactaaatcgtaatatgtcgcgttacatcagaaagggtaactattatt +aattaataaagggcttaatcactacatattagatcttatccgatagtcttatctattcgt +tgtatttttaagcggttctaattcagtcattatatcagtgctccgagttctttattattg +ttttaaggatgacaaaatgcctcttgttataacgctgggagaagcagactaagagtcgga +gcagttggtagaatgaggctgcaaaagacggtctcgacgaatggacagactttactaaac +caatgaaagacagaagtagagcaaagtctgaagtggtatcagcttaattatgacaaccct +taatacttccctttcgccgaatactggcgtggaaaggttttaaaagtcgaagtagttaga +ggcatctctcgctcataaataggtagactactcgcaatccaatgtgactatgtaatactg +ggaacatcagtccgcgatgcagcgtgtttatcaaccgtccccactcgcctggggagacat +gagaccacccccgtggggattattagtccgcagtaatcgactcttgacaatccttttcga +ttatgtcatagcaatttacgacagttcagcgaagtgactactcggcgaaatggtattact +aaagcattcgaacccacatgaatgtgattcttggcaatttctaatccactaaagcttttc +cgttgaatctggttgtagatatttatataagttcactaattaagatcacggtagtatatt +gatagtgatgtctttgcaagaggttggccgaggaatttacggattctctattgatacaat +ttgtctggcttataactcttaaggctgaaccaggcgtttttagacgacttgatcagctgt +tagaatggtttggactccctctttcatgtcagtaacatttcagccgttattgttacgata +tgcttgaacaatattgatctaccacacacccatagtatattttataggtcatgctgttac +ctacgagcatggtattccacttcccattcaatgagtattcaacatcactagcctcagaga +tgatgacccacctctaataacgtcacgttgcggccatgtgaaacctgaacttgagtagac +gatatcaagcgctttaaattgcatataacatttgagggtaaagctaagcggatgctttat +ataatcaatactcaataataagatttgattgcattttagagttatgacacgacatagttc +actaacgagttactattcccagatctagactgaagtactgatcgagacgatccttacgtc +gatgatcgttagttatcgacttaggtcgggtctctagcggtattggtacttaaccggaca +ctatactaataacccatgatcaaagcataacagaatacagacgataatttcgccaacata +tatgtacagaccccaagcatgagaagctcattgaaagctatcattgaagtcccgctcaca +atgtgtcttttccagacggtttaactggttcccgggagtcctggagtttcgacttacata +aatggaaacaatgtattttgctaatttatctatagcgtcatttggaccaatacagaatat +tatgttgcctagtaatccactataacccgcaagtgctgatagaaaatttttagacgattt +ataaatgccccaagtatccctcccgtgaatcctccgttatactaattagtattcgttcat +acgtataccgcgcatatatgaacatttggcgataaggcgcgtgaattgttacgtgacaga +gatagcagtttcttgtgatatggttaacagacgtacatgaagggaaactttatatctata +gtgatgcttccgtagaaataccgccactggtctgccaatgatgaagtatgtagctttagg +tttgtactatgaggctttcgtttgtttgcagagtataacagttgcgagtgaaaaaccgac +gaatttatactaatacgctttcactattggctacaaaatagggaagagtttcaatcatga +gagggagtatatggatgctttgtagctaaaggtagaacgtatgtatatgctgccgttcat +tcttgaaagatacataagcgataagttacgacaattataagcaacatccctaccttcgta +acgatttcactgttactgcgcttgaaatacactatggggctattggcggagagaagcaga +tcgcgccgagcatatacgagacctataatgttgatgatagagaaggcgtctgaattgata +catcgaagtacactttctttcgtagtatctctcgtcctctttctatctccggacacaaga +attaagttatatatatagagtcttaccaatcatgttgaatcctgattctcagagttcttt +ggcgggccttgtgatgactgagaaacaatgcaatattgctccaaatttcctaagcaaatt +ctcggttatgttatgttatcagcaaagcgttacgttatgttatttaaatctggaatgacg +gagcgaagttcttatgtcggtgtgggaataattcttttgaagacagcactccttaaataa +tatcgctccgtgtttgtatttatcgaatgggtctgtaaccttgcacaagcaaatcggtgg +tgtatatatcggataacaattaatacgatgttcatagtgacagtatactgatcgagtcct +ctaaagtcaattacctcacttaacaatctcattgatgttgtgtcattcccggtatcgccc +gtagtatgtgctctgattgaccgagtgtgaaccaaggaacatctactaatgcctttgtta +ggtaagatctctctgaattccttcgtgccaacttaaaacattatcaaaatttcttctact +tggattaactacttttacgagcatggcaaattcccctgtggaagacggttcattattatc +ggaaaccttatagaaattgcgtgttgactgaaattagatttttattgtaagagttgcatc +tttgcgattcctctggtctagcttccaatgaacagtcctcccttctattcgacatcgggt +ccttcgtacatgtctttgcgatgtaataattaggttcggagtgtggccttaatgggtgca +actaggaatacaacgcaaatttgctgacatgatagcaaatcggtatgccggcaccaaaac +gtgctccttgcttagcttgtgaatgagactcagtagttaaataaatccatatctgcaatc +gattccacaggtattgtccactatctttgaactactctaagagatacaagcttagctgag +accgaggtgtatatgactacgctgatatctgtaaggtaccaatgcaggcaaagtatgcga +gaagctaataccggctgtttccagctttataagattaaaatttggctgtcctggcggcct +cagaattgttctatcgtaatcagttggttcattaattagctaagtacgaggtacaactta +tctgtcccagaacagctccacaagtttttttacagccgaaacccctgtgtgaatcttaat +atccaagcgcgttatctgattagagtttacaactcagtattttatcagtacgttttgttt +ccaacattacccggtatgacaaaatgacgccacgtgtcgaataatggtctgaccaatgta +ggaagtgaaaagataaatat diff --git a/example/luatest/fasta/q_once.fasta b/example/luatest/fasta/q_once.fasta new file mode 100644 index 0000000..de2d071 --- /dev/null +++ b/example/luatest/fasta/q_once.fasta @@ -0,0 +1,171 @@ +>ONE Homo sapiens alu +GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGA +TCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACT +AAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAG +GCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCG +CCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGT +GGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCA +GGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAA +TTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAG +AATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCA +GCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGT +AATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGACC +AGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTG +GTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACC +CGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAG +AGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTT +TGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACA +TGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCT +GTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGG +TTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGT +CTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGG +CGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCG +TCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTA +CTCGGGAGGCTGAGGCAGGAGhAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCG +AGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCG +GGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACC +TGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAA +TACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGA +GGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACT +GCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTC +ACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGT +TCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGC +CGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCG +CTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTG +GGCGACAGAGCGAGACTCCG +>TWO IUB ambiguity codes +cttBtatcatatgctaKggNcataaaSatgtaaaDcDRtBggDtctttataattcBgtcg +tactDtDagcctatttSVHtHttKtgtHMaSattgWaHKHttttagacatWatgtRgaaa +NtactMcSMtYtcMgRtacttctWBacgaaatatagScDtttgaagacacatagtVgYgt +cattHWtMMWcStgttaggKtSgaYaaccWStcgBttgcgaMttBYatcWtgacaYcaga +gtaBDtRacttttcWatMttDBcatWtatcttactaBgaYtcttgttttttttYaaScYa +HgtgttNtSatcMtcVaaaStccRcctDaataataStcYtRDSaMtDttgttSagtRRca +tttHatSttMtWgtcgtatSSagactYaaattcaMtWatttaSgYttaRgKaRtccactt +tattRggaMcDaWaWagttttgacatgttctacaaaRaatataataaMttcgDacgaSSt +acaStYRctVaNMtMgtaggcKatcttttattaaaaagVWaHKYagtttttatttaacct +tacgtVtcVaattVMBcttaMtttaStgacttagattWWacVtgWYagWVRctDattBYt +gtttaagaagattattgacVatMaacattVctgtBSgaVtgWWggaKHaatKWcBScSWa +accRVacacaaactaccScattRatatKVtactatatttHttaagtttSKtRtacaaagt +RDttcaaaaWgcacatWaDgtDKacgaacaattacaRNWaatHtttStgttattaaMtgt +tgDcgtMgcatBtgcttcgcgaDWgagctgcgaggggVtaaScNatttacttaatgacag +cccccacatYScaMgtaggtYaNgttctgaMaacNaMRaacaaacaKctacatagYWctg +ttWaaataaaataRattagHacacaagcgKatacBttRttaagtatttccgatctHSaat +actcNttMaagtattMtgRtgaMgcataatHcMtaBSaRattagttgatHtMttaaKagg +YtaaBataSaVatactWtataVWgKgttaaaacagtgcgRatatacatVtHRtVYataSa +KtWaStVcNKHKttactatccctcatgWHatWaRcttactaggatctataDtDHBttata +aaaHgtacVtagaYttYaKcctattcttcttaataNDaaggaaaDYgcggctaaWSctBa +aNtgctggMBaKctaMVKagBaactaWaDaMaccYVtNtaHtVWtKgRtcaaNtYaNacg +gtttNattgVtttctgtBaWgtaattcaagtcaVWtactNggattctttaYtaaagccgc +tcttagHVggaYtgtNcDaVagctctctKgacgtatagYcctRYHDtgBattDaaDgccK +tcHaaStttMcctagtattgcRgWBaVatHaaaataYtgtttagMDMRtaataaggatMt +ttctWgtNtgtgaaaaMaatatRtttMtDgHHtgtcattttcWattRSHcVagaagtacg +ggtaKVattKYagactNaatgtttgKMMgYNtcccgSKttctaStatatNVataYHgtNa +BKRgNacaactgatttcctttaNcgatttctctataScaHtataRagtcRVttacDSDtt +aRtSatacHgtSKacYagttMHtWataggatgactNtatSaNctataVtttRNKtgRacc +tttYtatgttactttttcctttaaacatacaHactMacacggtWataMtBVacRaSaatc +cgtaBVttccagccBcttaRKtgtgcctttttRtgtcagcRttKtaaacKtaaatctcac +aattgcaNtSBaaccgggttattaaBcKatDagttactcttcattVtttHaaggctKKga +tacatcBggScagtVcacattttgaHaDSgHatRMaHWggtatatRgccDttcgtatcga +aacaHtaagttaRatgaVacttagattVKtaaYttaaatcaNatccRttRRaMScNaaaD +gttVHWgtcHaaHgacVaWtgttScactaagSgttatcttagggDtaccagWattWtRtg +ttHWHacgattBtgVcaYatcggttgagKcWtKKcaVtgaYgWctgYggVctgtHgaNcV +taBtWaaYatcDRaaRtSctgaHaYRttagatMatgcatttNattaDttaattgttctaa +ccctcccctagaWBtttHtBccttagaVaatMcBHagaVcWcagBVttcBtaYMccagat +gaaaaHctctaacgttagNWRtcggattNatcRaNHttcagtKttttgWatWttcSaNgg +gaWtactKKMaacatKatacNattgctWtatctaVgagctatgtRaHtYcWcttagccaa +tYttWttaWSSttaHcaaaaagVacVgtaVaRMgattaVcDactttcHHggHRtgNcctt +tYatcatKgctcctctatVcaaaaKaaaagtatatctgMtWtaaaacaStttMtcgactt +taSatcgDataaactaaacaagtaaVctaggaSccaatMVtaaSKNVattttgHccatca +cBVctgcaVatVttRtactgtVcaattHgtaaattaaattttYtatattaaRSgYtgBag +aHSBDgtagcacRHtYcBgtcacttacactaYcgctWtattgSHtSatcataaatataHt +cgtYaaMNgBaatttaRgaMaatatttBtttaaaHHKaatctgatWatYaacttMctctt +ttVctagctDaaagtaVaKaKRtaacBgtatccaaccactHHaagaagaaggaNaaatBW +attccgStaMSaMatBttgcatgRSacgttVVtaaDMtcSgVatWcaSatcttttVatag +ttactttacgatcaccNtaDVgSRcgVcgtgaacgaNtaNatatagtHtMgtHcMtagaa +attBgtataRaaaacaYKgtRccYtatgaagtaataKgtaaMttgaaRVatgcagaKStc +tHNaaatctBBtcttaYaBWHgtVtgacagcaRcataWctcaBcYacYgatDgtDHccta +>THREE Homo sapiens frequency +aacacttcaccaggtatcgtgaaggctcaagattacccagagaacctttgcaatataaga +atatgtatgcagcattaccctaagtaattatattctttttctgactcaaagtgacaagcc +ctagtgtatattaaatcggtatatttgggaaattcctcaaactatcctaatcaggtagcc +atgaaagtgatcaaaaaagttcgtacttataccatacatgaattctggccaagtaaaaaa +tagattgcgcaaaattcgtaccttaagtctctcgccaagatattaggatcctattactca +tatcgtgtttttctttattgccgccatccccggagtatctcacccatccttctcttaaag +gcctaatattacctatgcaaataaacatatattgttgaaaattgagaacctgatcgtgat +tcttatgtgtaccatatgtatagtaatcacgcgactatatagtgctttagtatcgcccgt +gggtgagtgaatattctgggctagcgtgagatagtttcttgtcctaatatttttcagatc +gaatagcttctatttttgtgtttattgacatatgtcgaaactccttactcagtgaaagtc +atgaccagatccacgaacaatcttcggaatcagtctcgttttacggcggaatcttgagtc +taacttatatcccgtcgcttactttctaacaccccttatgtatttttaaaattacgttta +ttcgaacgtacttggcggaagcgttattttttgaagtaagttacattgggcagactcttg +acattttcgatacgactttctttcatccatcacaggactcgttcgtattgatatcagaag +ctcgtgatgattagttgtcttctttaccaatactttgaggcctattctgcgaaatttttg +ttgccctgcgaacttcacataccaaggaacacctcgcaacatgccttcatatccatcgtt +cattgtaattcttacacaatgaatcctaagtaattacatccctgcgtaaaagatggtagg +ggcactgaggatatattaccaagcatttagttatgagtaatcagcaatgtttcttgtatt +aagttctctaaaatagttacatcgtaatgttatctcgggttccgcgaataaacgagatag +attcattatatatggccctaagcaaaaacctcctcgtattctgttggtaattagaatcac +acaatacgggttgagatattaattatttgtagtacgaagagatataaaaagatgaacaat +tactcaagtcaagatgtatacgggatttataataaaaatcgggtagagatctgctttgca +attcagacgtgccactaaatcgtaatatgtcgcgttacatcagaaagggtaactattatt +aattaataaagggcttaatcactacatattagatcttatccgatagtcttatctattcgt +tgtatttttaagcggttctaattcagtcattatatcagtgctccgagttctttattattg +ttttaaggatgacaaaatgcctcttgttataacgctgggagaagcagactaagagtcgga +gcagttggtagaatgaggctgcaaaagacggtctcgacgaatggacagactttactaaac +caatgaaagacagaagtagagcaaagtctgaagtggtatcagcttaattatgacaaccct +taatacttccctttcgccgaatactggcgtggaaaggttttaaaagtcgaagtagttaga +ggcatctctcgctcataaataggtagactactcgcaatccaatgtgactatgtaatactg +ggaacatcagtccgcgatgcagcgtgtttatcaaccgtccccactcgcctggggagacat +gagaccacccccgtggggattattagtccgcagtaatcgactcttgacaatccttttcga +ttatgtcatagcaatttacgacagttcagcgaagtgactactcggcgaaatggtattact +aaagcattcgaacccacatgaatgtgattcttggcaatttctaatccactaaagcttttc +cgttgaatctggttgtagatatttatataagttcactaattaagatcacggtagtatatt +gatagtgatgtctttgcaagaggttggccgaggaatttacggattctctattgatacaat +ttgtctggcttataactcttaaggctgaaccaggcgtttttagacgacttgatcagctgt +tagaatggtttggactccctctttcatgtcagtaacatttcagccgttattgttacgata +tgcttgaacaatattgatctaccacacacccatagtatattttataggtcatgctgttac +ctacgagcatggtattccacttcccattcaatgagtattcaacatcactagcctcagaga +tgatgacccacctctaataacgtcacgttgcggccatgtgaaacctgaacttgagtagac +gatatcaagcgctttaaattgcatataacatttgagggtaaagctaagcggatgctttat +ataatcaatactcaataataagatttgattgcattttagagttatgacacgacatagttc +actaacgagttactattcccagatctagactgaagtactgatcgagacgatccttacgtc +gatgatcgttagttatcgacttaggtcgggtctctagcggtattggtacttaaccggaca +ctatactaataacccatgatcaaagcataacagaatacagacgataatttcgccaacata +tatgtacagaccccaagcatgagaagctcattgaaagctatcattgaagtcccgctcaca +atgtgtcttttccagacggtttaactggttcccgggagtcctggagtttcgacttacata +aatggaaacaatgtattttgctaatttatctatagcgtcatttggaccaatacagaatat +tatgttgcctagtaatccactataacccgcaagtgctgatagaaaatttttagacgattt +ataaatgccccaagtatccctcccgtgaatcctccgttatactaattagtattcgttcat +acgtataccgcgcatatatgaacatttggcgataaggcgcgtgaattgttacgtgacaga +gatagcagtttcttgtgatatggttaacagacgtacatgaagggaaactttatatctata +gtgatgcttccgtagaaataccgccactggtctgccaatgatgaagtatgtagctttagg +tttgtactatgaggctttcgtttgtttgcagagtataacagttgcgagtgaaaaaccgac +gaatttatactaatacgctttcactattggctacaaaatagggaagagtttcaatcatga +gagggagtatatggatgctttgtagctaaaggtagaacgtatgtatatgctgccgttcat +tcttgaaagatacataagcgataagttacgacaattataagcaacatccctaccttcgta +acgatttcactgttactgcgcttgaaatacactatggggctattggcggagagaagcaga +tcgcgccgagcatatacgagacctataatgttgatgatagagaaggcgtctgaattgata +catcgaagtacactttctttcgtagtatctctcgtcctctttctatctccggacacaaga +attaagttatatatatagagtcttaccaatcatgttgaatcctgattctcagagttcttt +ggcgggccttgtgatgactgagaaacaatgcaatattgctccaaatttcctaagcaaatt +ctcggttatgttatgttatcagcaaagcgttacgttatgttatttaaatctggaatgacg +gagcgaagttcttatgtcggtgtgggaataattcttttgaagacagcactccttaaataa +tatcgctccgtgtttgtatttatcgaatgggtctgtaaccttgcacaagcaaatcggtgg +tgtatatatcggataacaattaatacgatgttcatagtgacagtatactgatcgagtcct +ctaaagtcaattacctcacttaacaatctcattgatgttgtgtcattcccggtatcgccc +gtagtatgtgctctgattgaccgagtgtgaaccaaggaacatctactaatgcctttgtta +ggtaagatctctctgaattccttcgtgccaacttaaaacattatcaaaatttcttctact +tggattaactacttttacgagcatggcaaattcccctgtggaagacggttcattattatc +ggaaaccttatagaaattgcgtgttgactgaaattagatttttattgtaagagttgcatc +tttgcgattcctctggtctagcttccaatgaacagtcctcccttctattcgacatcgggt +ccttcgtacatgtctttgcgatgtaataattaggttcggagtgtggccttaatgggtgca +actaggaatacaacgcaaatttgctgacatgatagcaaatcggtatgccggcaccaaaac +gtgctccttgcttagcttgtgaatgagactcagtagttaaataaatccatatctgcaatc +gattccacaggtattgtccactatctttgaactactctaagagatacaagcttagctgag +accgaggtgtatatgactacgctgatatctgtaaggtaccaatgcaggcaaagtatgcga +gaagctaataccggctgtttccagctttataagattaaaatttggctgtcctggcggcct +cagaattgttctatcgtaatcagttggttcattaattagctaagtacgaggtacaactta +tctgtcccagaacagctccacaagtttttttacagccgaaacccctgtgtgaatcttaat +atccaagcgcgttatctgattagagtttacaactcagtattttatcagtacgttttgttt +ccaacattacccggtatgacaaaatgacgccacgtgtcgaataatggtctgaccaatgta +ggaagtgaaaagataaatat diff --git a/example/luatest/fasta/test.fasta b/example/luatest/fasta/test.fasta new file mode 100644 index 0000000..f1caba0 --- /dev/null +++ b/example/luatest/fasta/test.fasta @@ -0,0 +1,171 @@ +>ONE Homo sapiens alu +GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGA +TCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACT +AAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAG +GCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCG +CCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGT +GGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCA +GGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAA +TTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAG +AATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCA +GCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGT +AATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGACC +AGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTG +GTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACC +CGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAG +AGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTT +TGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACA +TGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCT +GTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGG +TTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGT +CTCAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGG +CGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCG +TCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTA +CTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCG +AGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCG +GGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACC +TGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAA +TACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGA +GGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACT +GCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAGGCCGGGCGCGGTGGCTC +ACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGT +TCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGC +CGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCG +CTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTG +GGCGACAGAGCGAGACTCCG +>TWO IUB ambiguity codes +cttBtatcatatgctaKggNcataaaSatgtaaaDcDRtBggDtctttataattcBgtcg +tactDtDagcctatttSVHtHttKtgtHMaSattgWaHKHttttagacatWatgtRgaaa +NtactMcSMtYtcMgRtacttctWBacgaaatatagScDtttgaagacacatagtVgYgt +cattHWtMMWcStgttaggKtSgaYaaccWStcgBttgcgaMttBYatcWtgacaYcaga +gtaBDtRacttttcWatMttDBcatWtatcttactaBgaYtcttgttttttttYaaScYa +HgtgttNtSatcMtcVaaaStccRcctDaataataStcYtRDSaMtDttgttSagtRRca +tttHatSttMtWgtcgtatSSagactYaaattcaMtWatttaSgYttaRgKaRtccactt +tattRggaMcDaWaWagttttgacatgttctacaaaRaatataataaMttcgDacgaSSt +acaStYRctVaNMtMgtaggcKatcttttattaaaaagVWaHKYagtttttatttaacct +tacgtVtcVaattVMBcttaMtttaStgacttagattWWacVtgWYagWVRctDattBYt +gtttaagaagattattgacVatMaacattVctgtBSgaVtgWWggaKHaatKWcBScSWa +accRVacacaaactaccScattRatatKVtactatatttHttaagtttSKtRtacaaagt +RDttcaaaaWgcacatWaDgtDKacgaacaattacaRNWaatHtttStgttattaaMtgt +tgDcgtMgcatBtgcttcgcgaDWgagctgcgaggggVtaaScNatttacttaatgacag +cccccacatYScaMgtaggtYaNgttctgaMaacNaMRaacaaacaKctacatagYWctg +ttWaaataaaataRattagHacacaagcgKatacBttRttaagtatttccgatctHSaat +actcNttMaagtattMtgRtgaMgcataatHcMtaBSaRattagttgatHtMttaaKagg +YtaaBataSaVatactWtataVWgKgttaaaacagtgcgRatatacatVtHRtVYataSa +KtWaStVcNKHKttactatccctcatgWHatWaRcttactaggatctataDtDHBttata +aaaHgtacVtagaYttYaKcctattcttcttaataNDaaggaaaDYgcggctaaWSctBa +aNtgctggMBaKctaMVKagBaactaWaDaMaccYVtNtaHtVWtKgRtcaaNtYaNacg +gtttNattgVtttctgtBaWgtaattcaagtcaVWtactNggattctttaYtaaagccgc +tcttagHVggaYtgtNcDaVagctctctKgacgtatagYcctRYHDtgBattDaaDgccK +tcHaaStttMcctagtattgcRgWBaVatHaaaataYtgtttagMDMRtaataaggatMt +ttctWgtNtgtgaaaaMaatatRtttMtDgHHtgtcattttcWattRSHcVagaagtacg +ggtaKVattKYagactNaatgtttgKMMgYNtcccgSKttctaStatatNVataYHgtNa +BKRgNacaactgatttcctttaNcgatttctctataScaHtataRagtcRVttacDSDtt +aRtSatacHgtSKacYagttMHtWataggatgactNtatSaNctataVtttRNKtgRacc +tttYtatgttactttttcctttaaacatacaHactMacacggtWataMtBVacRaSaatc +cgtaBVttccagccBcttaRKtgtgcctttttRtgtcagcRttKtaaacKtaaatctcac +aattgcaNtSBaaccgggttattaaBcKatDagttactcttcattVtttHaaggctKKga +tacatcBggScagtVcacattttgaHaDSgHatRMaHWggtatatRgccDttcgtatcga +aacaHtaagttaRatgaVacttagattVKtaaYttaaatcaNatccRttRRaMScNaaaD +gttVHWgtcHaaHgacVaWtgttScactaagSgttatcttagggDtaccagWattWtRtg +ttHWHacgattBtgVcaYatcggttgagKcWtKKcaVtgaYgWctgYggVctgtHgaNcV +taBtWaaYatcDRaaRtSctgaHaYRttagatMatgcatttNattaDttaattgttctaa +ccctcccctagaWBtttHtBccttagaVaatMcBHagaVcWcagBVttcBtaYMccagat +gaaaaHctctaacgttagNWRtcggattNatcRaNHttcagtKttttgWatWttcSaNgg +gaWtactKKMaacatKatacNattgctWtatctaVgagctatgtRaHtYcWcttagccaa +tYttWttaWSSttaHcaaaaagVacVgtaVaRMgattaVcDactttcHHggHRtgNcctt +tYatcatKgctcctctatVcaaaaKaaaagtatatctgMtWtaaaacaStttMtcgactt +taSatcgDataaactaaacaagtaaVctaggaSccaatMVtaaSKNVattttgHccatca +cBVctgcaVatVttRtactgtVcaattHgtaaattaaattttYtatattaaRSgYtgBag +aHSBDgtagcacRHtYcBgtcacttacactaYcgctWtattgSHtSatcataaatataHt +cgtYaaMNgBaatttaRgaMaatatttBtttaaaHHKaatctgatWatYaacttMctctt +ttVctagctDaaagtaVaKaKRtaacBgtatccaaccactHHaagaagaaggaNaaatBW +attccgStaMSaMatBttgcatgRSacgttVVtaaDMtcSgVatWcaSatcttttVatag +ttactttacgatcaccNtaDVgSRcgVcgtgaacgaNtaNatatagtHtMgtHcMtagaa +attBgtataRaaaacaYKgtRccYtatgaagtaataKgtaaMttgaaRVatgcagaKStc +tHNaaatctBBtcttaYaBWHgtVtgacagcaRcataWctcaBcYacYgatDgtDHccta +>THREE Homo sapiens frequency +aacacttcaccaggtatcgtgaaggctcaagattacccagagaacctttgcaatataaga +atatgtatgcagcattaccctaagtaattatattctttttctgactcaaagtgacaagcc +ctagtgtatattaaatcggtatatttgggaaattcctcaaactatcctaatcaggtagcc +atgaaagtgatcaaaaaagttcgtacttataccatacatgaattctggccaagtaaaaaa +tagattgcgcaaaattcgtaccttaagtctctcgccaagatattaggatcctattactca +tatcgtgtttttctttattgccgccatccccggagtatctcacccatccttctcttaaag +gcctaatattacctatgcaaataaacatatattgttgaaaattgagaacctgatcgtgat +tcttatgtgtaccatatgtatagtaatcacgcgactatatagtgctttagtatcgcccgt +gggtgagtgaatattctgggctagcgtgagatagtttcttgtcctaatatttttcagatc +gaatagcttctatttttgtgtttattgacatatgtcgaaactccttactcagtgaaagtc +atgaccagatccacgaacaatcttcggaatcagtctcgttttacggcggaatcttgagtc +taacttatatcccgtcgcttactttctaacaccccttatgtatttttaaaattacgttta +ttcgaacgtacttggcggaagcgttattttttgaagtaagttacattgggcagactcttg +acattttcgatacgactttctttcatccatcacaggactcgttcgtattgatatcagaag +ctcgtgatgattagttgtcttctttaccaatactttgaggcctattctgcgaaatttttg +ttgccctgcgaacttcacataccaaggaacacctcgcaacatgccttcatatccatcgtt +cattgtaattcttacacaatgaatcctaagtaattacatccctgcgtaaaagatggtagg +ggcactgaggatatattaccaagcatttagttatgagtaatcagcaatgtttcttgtatt +aagttctctaaaatagttacatcgtaatgttatctcgggttccgcgaataaacgagatag +attcattatatatggccctaagcaaaaacctcctcgtattctgttggtaattagaatcac 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b/example/luatest/lib/CMakeLists.txt new file mode 100644 index 0000000..2c9f09d --- /dev/null +++ b/example/luatest/lib/CMakeLists.txt @@ -0,0 +1,18 @@ +cmake_minimum_required(VERSION 3.5) +SET(CMAKE_CXX_COMPILER /usr/bin/g++) +project (c_handle_weixinnum) + +add_definitions(-g -W -Wall -O2) +SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -shared -fPIC") +add_library(${PROJECT_NAME}_static handle_weixinnum.cpp) +add_library(${PROJECT_NAME} SHARED handle_weixinnum.cpp) +set_target_properties(${PROJECT_NAME}_static PROPERTIES OUTPUT_NAME ${PROJECT_NAME}) + +add_library(handle_fasta_find_static handle_fasta_find.cpp) +add_library(handle_fasta_find SHARED handle_fasta_find.cpp) +set_target_properties(handle_fasta_find_static PROPERTIES OUTPUT_NAME "handle_fasta_find") + +add_library(handle_fasta_count_static handle_fasta_count.cpp) +add_library(handle_fasta_count SHARED handle_fasta_count.cpp) +set_target_properties(handle_fasta_count_static PROPERTIES OUTPUT_NAME "handle_fasta_count") + diff --git a/example/luatest/lib/build/CMakeCache.txt b/example/luatest/lib/build/CMakeCache.txt new file mode 100644 index 0000000..b284733 --- /dev/null +++ b/example/luatest/lib/build/CMakeCache.txt @@ -0,0 +1,345 @@ +# This is the CMakeCache file. +# For build in directory: /root/workspace/tsg_lua_0.99/example/demo_winxinhao/lib/build +# It was generated by CMake: /usr/local/bin/cmake +# You can edit this file to change values found and used by cmake. +# If you do not want to change any of the values, simply exit the editor. +# If you do want to change a value, simply edit, save, and exit the editor. +# The syntax for the file is as follows: +# KEY:TYPE=VALUE +# KEY is the name of a variable in the cache. +# TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!. +# VALUE is the current value for the KEY. + +######################## +# EXTERNAL cache entries +######################## + +//Path to a program. +CMAKE_AR:FILEPATH=/opt/rh/devtoolset-9/root/usr/bin/ar + +//Choose the type of build, options are: None(CMAKE_CXX_FLAGS or +// CMAKE_C_FLAGS used) Debug Release RelWithDebInfo MinSizeRel. +CMAKE_BUILD_TYPE:STRING= + +//Enable/Disable color output during build. +CMAKE_COLOR_MAKEFILE:BOOL=ON + +//A wrapper around 'ar' adding the appropriate '--plugin' option +// for the GCC compiler +CMAKE_CXX_COMPILER_AR:FILEPATH=/usr/bin/gcc-ar + +//A wrapper around 'ranlib' adding the appropriate '--plugin' option +// for the GCC compiler +CMAKE_CXX_COMPILER_RANLIB:FILEPATH=/usr/bin/gcc-ranlib + +//Flags used by the compiler during all build types. +CMAKE_CXX_FLAGS:STRING= + +//Flags used by the compiler during debug builds. +CMAKE_CXX_FLAGS_DEBUG:STRING=-g + +//Flags used by the compiler during release builds for minimum +// size. +CMAKE_CXX_FLAGS_MINSIZEREL:STRING=-Os -DNDEBUG + +//Flags used by the compiler during release builds. +CMAKE_CXX_FLAGS_RELEASE:STRING=-O3 -DNDEBUG + +//Flags used by the compiler during release builds with debug info. 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the linker. +CMAKE_EXE_LINKER_FLAGS:STRING= + +//Flags used by the linker during debug builds. +CMAKE_EXE_LINKER_FLAGS_DEBUG:STRING= + +//Flags used by the linker during release minsize builds. +CMAKE_EXE_LINKER_FLAGS_MINSIZEREL:STRING= + +//Flags used by the linker during release builds. +CMAKE_EXE_LINKER_FLAGS_RELEASE:STRING= + +//Flags used by the linker during Release with Debug Info builds. +CMAKE_EXE_LINKER_FLAGS_RELWITHDEBINFO:STRING= + +//Enable/Disable output of compile commands during generation. +CMAKE_EXPORT_COMPILE_COMMANDS:BOOL=OFF + +//Install path prefix, prepended onto install directories. +CMAKE_INSTALL_PREFIX:PATH=/usr/local + +//Path to a program. +CMAKE_LINKER:FILEPATH=/opt/rh/devtoolset-9/root/usr/bin/ld + +//Path to a program. +CMAKE_MAKE_PROGRAM:FILEPATH=/usr/bin/gmake + +//Flags used by the linker during the creation of modules. +CMAKE_MODULE_LINKER_FLAGS:STRING= + +//Flags used by the linker during debug builds. +CMAKE_MODULE_LINKER_FLAGS_DEBUG:STRING= + +//Flags used by the linker during release minsize builds. +CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL:STRING= + +//Flags used by the linker during release builds. +CMAKE_MODULE_LINKER_FLAGS_RELEASE:STRING= + +//Flags used by the linker during Release with Debug Info builds. +CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO:STRING= + +//Path to a program. +CMAKE_NM:FILEPATH=/opt/rh/devtoolset-9/root/usr/bin/nm + +//Path to a program. +CMAKE_OBJCOPY:FILEPATH=/opt/rh/devtoolset-9/root/usr/bin/objcopy + +//Path to a program. +CMAKE_OBJDUMP:FILEPATH=/opt/rh/devtoolset-9/root/usr/bin/objdump + +//Value Computed by CMake +CMAKE_PROJECT_NAME:STATIC=c_handle_weixinnum + +//Path to a program. +CMAKE_RANLIB:FILEPATH=/opt/rh/devtoolset-9/root/usr/bin/ranlib + +//Flags used by the linker during the creation of dll's. +CMAKE_SHARED_LINKER_FLAGS:STRING= + +//Flags used by the linker during debug builds. +CMAKE_SHARED_LINKER_FLAGS_DEBUG:STRING= + +//Flags used by the linker during release minsize builds. 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+CMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO:STRING= + +//Path to a program. +CMAKE_STRIP:FILEPATH=/opt/rh/devtoolset-9/root/usr/bin/strip + +//If this value is on, makefiles will be generated without the +// .SILENT directive, and all commands will be echoed to the console +// during the make. This is useful for debugging only. With Visual +// Studio IDE projects all commands are done without /nologo. +CMAKE_VERBOSE_MAKEFILE:BOOL=FALSE + +//Value Computed by CMake +c_handle_weixinnum_BINARY_DIR:STATIC=/root/workspace/tsg_lua_0.99/example/demo_winxinhao/lib/build + +//Dependencies for target +c_handle_weixinnum_LIB_DEPENDS:STATIC= + +//Value Computed by CMake +c_handle_weixinnum_SOURCE_DIR:STATIC=/root/workspace/tsg_lua_0.99/example/demo_winxinhao/lib + +//Dependencies for target +c_handle_weixinnum_static_LIB_DEPENDS:STATIC= + +//Dependencies for target +handle_fasta_count_LIB_DEPENDS:STATIC= + +//Dependencies for target +handle_fasta_count_static_LIB_DEPENDS:STATIC= + +//Dependencies for target +handle_fasta_find_LIB_DEPENDS:STATIC= + +//Dependencies for target +handle_fasta_find_static_LIB_DEPENDS:STATIC= + + +######################## +# INTERNAL cache entries +######################## + +//ADVANCED property for variable: CMAKE_AR +CMAKE_AR-ADVANCED:INTERNAL=1 +//This is the directory where this 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COMPILER_VERSION_MINOR DEC(__ARMCC_VERSION/10000 % 10) + # define COMPILER_VERSION_PATCH DEC(__ARMCC_VERSION % 10000) +#endif + + +#elif defined(__SDCC_VERSION_MAJOR) || defined(SDCC) +# define COMPILER_ID "SDCC" +# if defined(__SDCC_VERSION_MAJOR) +# define COMPILER_VERSION_MAJOR DEC(__SDCC_VERSION_MAJOR) +# define COMPILER_VERSION_MINOR DEC(__SDCC_VERSION_MINOR) +# define COMPILER_VERSION_PATCH DEC(__SDCC_VERSION_PATCH) +# else + /* SDCC = VRP */ +# define COMPILER_VERSION_MAJOR DEC(SDCC/100) +# define COMPILER_VERSION_MINOR DEC(SDCC/10 % 10) +# define COMPILER_VERSION_PATCH DEC(SDCC % 10) +# endif + +#elif defined(_SGI_COMPILER_VERSION) || defined(_COMPILER_VERSION) +# define COMPILER_ID "MIPSpro" +# if defined(_SGI_COMPILER_VERSION) + /* _SGI_COMPILER_VERSION = VRP */ +# define COMPILER_VERSION_MAJOR DEC(_SGI_COMPILER_VERSION/100) +# define COMPILER_VERSION_MINOR DEC(_SGI_COMPILER_VERSION/10 % 10) +# define COMPILER_VERSION_PATCH DEC(_SGI_COMPILER_VERSION % 10) +# else + /* _COMPILER_VERSION = VRP */ +# define COMPILER_VERSION_MAJOR DEC(_COMPILER_VERSION/100) +# define COMPILER_VERSION_MINOR DEC(_COMPILER_VERSION/10 % 10) +# define COMPILER_VERSION_PATCH DEC(_COMPILER_VERSION % 10) +# endif + + +/* These compilers are either not known or too old to define an + identification macro. Try to identify the platform and guess that + it is the native compiler. */ +#elif defined(__sgi) +# define COMPILER_ID "MIPSpro" + +#elif defined(__hpux) || defined(__hpua) +# define COMPILER_ID "HP" + +#else /* unknown compiler */ +# define COMPILER_ID "" +#endif + +/* Construct the string literal in pieces to prevent the source from + getting matched. Store it in a pointer rather than an array + because some compilers will just produce instructions to fill the + array rather than assigning a pointer to a static array. */ +char const* info_compiler = "INFO" ":" "compiler[" COMPILER_ID "]"; +#ifdef SIMULATE_ID +char const* info_simulate = "INFO" ":" "simulate[" SIMULATE_ID "]"; +#endif + +#ifdef __QNXNTO__ +char const* qnxnto = "INFO" ":" "qnxnto[]"; +#endif + +#if defined(__CRAYXE) || defined(__CRAYXC) +char const *info_cray = "INFO" ":" "compiler_wrapper[CrayPrgEnv]"; +#endif + +#define STRINGIFY_HELPER(X) #X +#define STRINGIFY(X) STRINGIFY_HELPER(X) + +/* Identify known platforms by name. */ +#if defined(__linux) || defined(__linux__) || defined(linux) +# define PLATFORM_ID "Linux" + +#elif defined(__CYGWIN__) +# define PLATFORM_ID "Cygwin" + +#elif defined(__MINGW32__) +# define PLATFORM_ID "MinGW" + +#elif defined(__APPLE__) +# define PLATFORM_ID "Darwin" + +#elif defined(_WIN32) || defined(__WIN32__) || defined(WIN32) +# define PLATFORM_ID "Windows" + +#elif defined(__FreeBSD__) || defined(__FreeBSD) +# define PLATFORM_ID "FreeBSD" + +#elif defined(__NetBSD__) || defined(__NetBSD) +# define PLATFORM_ID "NetBSD" + +#elif defined(__OpenBSD__) || defined(__OPENBSD) +# define PLATFORM_ID "OpenBSD" + +#elif defined(__sun) || defined(sun) +# define PLATFORM_ID "SunOS" + +#elif defined(_AIX) || defined(__AIX) || defined(__AIX__) || defined(__aix) || defined(__aix__) +# define PLATFORM_ID "AIX" + +#elif defined(__sgi) || defined(__sgi__) || defined(_SGI) +# define PLATFORM_ID "IRIX" + +#elif defined(__hpux) || defined(__hpux__) +# define PLATFORM_ID "HP-UX" + +#elif defined(__HAIKU__) +# define PLATFORM_ID "Haiku" + +#elif defined(__BeOS) || defined(__BEOS__) || defined(_BEOS) +# define PLATFORM_ID "BeOS" + +#elif defined(__QNX__) || defined(__QNXNTO__) +# define PLATFORM_ID "QNX" + +#elif defined(__tru64) || defined(_tru64) || defined(__TRU64__) +# define PLATFORM_ID "Tru64" + +#elif defined(__riscos) || defined(__riscos__) +# define PLATFORM_ID "RISCos" + +#elif defined(__sinix) || defined(__sinix__) || defined(__SINIX__) +# define PLATFORM_ID "SINIX" + +#elif defined(__UNIX_SV__) +# define PLATFORM_ID "UNIX_SV" + +#elif defined(__bsdos__) +# define PLATFORM_ID "BSDOS" + +#elif defined(_MPRAS) || defined(MPRAS) +# define PLATFORM_ID "MP-RAS" + +#elif defined(__osf) || defined(__osf__) +# define PLATFORM_ID "OSF1" + +#elif defined(_SCO_SV) || defined(SCO_SV) || defined(sco_sv) +# define PLATFORM_ID "SCO_SV" + +#elif defined(__ultrix) || defined(__ultrix__) || defined(_ULTRIX) +# define PLATFORM_ID "ULTRIX" + +#elif defined(__XENIX__) || defined(_XENIX) || defined(XENIX) +# define PLATFORM_ID "Xenix" + +#elif defined(__WATCOMC__) +# if defined(__LINUX__) +# define PLATFORM_ID "Linux" + +# elif defined(__DOS__) +# define PLATFORM_ID "DOS" + +# elif defined(__OS2__) +# define PLATFORM_ID "OS2" + +# elif defined(__WINDOWS__) +# define PLATFORM_ID "Windows3x" + +# else /* unknown platform */ +# define PLATFORM_ID +# endif + +#else /* unknown platform */ +# define PLATFORM_ID + +#endif + +/* For windows compilers MSVC and Intel we can determine + the architecture of the compiler being used. This is because + the compilers do not have flags that can change the architecture, + but rather depend on which compiler is being used +*/ +#if defined(_WIN32) && defined(_MSC_VER) +# if defined(_M_IA64) +# define ARCHITECTURE_ID "IA64" + +# elif defined(_M_X64) || defined(_M_AMD64) +# define ARCHITECTURE_ID "x64" + +# elif defined(_M_IX86) +# define ARCHITECTURE_ID "X86" + +# elif defined(_M_ARM) +# if _M_ARM == 4 +# define ARCHITECTURE_ID "ARMV4I" +# elif _M_ARM == 5 +# define ARCHITECTURE_ID "ARMV5I" +# else +# define ARCHITECTURE_ID "ARMV" STRINGIFY(_M_ARM) +# endif + +# elif defined(_M_MIPS) +# define ARCHITECTURE_ID "MIPS" + +# elif defined(_M_SH) +# define ARCHITECTURE_ID "SHx" + +# else /* unknown architecture */ +# define ARCHITECTURE_ID "" +# endif + +#elif defined(__WATCOMC__) +# if defined(_M_I86) +# define ARCHITECTURE_ID "I86" + +# elif defined(_M_IX86) +# define ARCHITECTURE_ID "X86" + +# else /* unknown architecture */ +# define ARCHITECTURE_ID "" +# endif + +#else +# define ARCHITECTURE_ID +#endif + +/* Convert integer to decimal digit literals. */ +#define DEC(n) \ + ('0' + (((n) / 10000000)%10)), \ + ('0' + (((n) / 1000000)%10)), \ + ('0' + (((n) / 100000)%10)), \ + ('0' + (((n) / 10000)%10)), \ + ('0' + (((n) / 1000)%10)), \ + ('0' + (((n) / 100)%10)), \ + ('0' + (((n) / 10)%10)), \ + ('0' + ((n) % 10)) + +/* Convert integer to hex digit literals. */ +#define HEX(n) \ + ('0' + ((n)>>28 & 0xF)), \ + ('0' + ((n)>>24 & 0xF)), \ + ('0' + ((n)>>20 & 0xF)), \ + ('0' + ((n)>>16 & 0xF)), \ + ('0' + ((n)>>12 & 0xF)), \ + ('0' + ((n)>>8 & 0xF)), \ + ('0' + ((n)>>4 & 0xF)), \ + ('0' + ((n) & 0xF)) + +/* Construct a string literal encoding the version number components. */ +#ifdef COMPILER_VERSION_MAJOR +char const info_version[] = { + 'I', 'N', 'F', 'O', ':', + 'c','o','m','p','i','l','e','r','_','v','e','r','s','i','o','n','[', + COMPILER_VERSION_MAJOR, +# ifdef COMPILER_VERSION_MINOR + '.', COMPILER_VERSION_MINOR, +# ifdef COMPILER_VERSION_PATCH + '.', COMPILER_VERSION_PATCH, +# ifdef COMPILER_VERSION_TWEAK + '.', COMPILER_VERSION_TWEAK, +# endif +# endif +# endif + ']','\0'}; +#endif + +/* Construct a string literal encoding the version number components. */ +#ifdef SIMULATE_VERSION_MAJOR +char const info_simulate_version[] = { + 'I', 'N', 'F', 'O', ':', + 's','i','m','u','l','a','t','e','_','v','e','r','s','i','o','n','[', + SIMULATE_VERSION_MAJOR, +# ifdef SIMULATE_VERSION_MINOR + '.', SIMULATE_VERSION_MINOR, +# ifdef SIMULATE_VERSION_PATCH + '.', SIMULATE_VERSION_PATCH, +# ifdef SIMULATE_VERSION_TWEAK + '.', SIMULATE_VERSION_TWEAK, +# endif +# endif +# endif + ']','\0'}; +#endif + +/* Construct the string literal in pieces to prevent the source from + getting matched. Store it in a pointer rather than an array + because some compilers will just produce instructions to fill the + array rather than assigning a pointer to a static array. */ +char const* info_platform = "INFO" ":" "platform[" PLATFORM_ID "]"; +char const* info_arch = "INFO" ":" "arch[" ARCHITECTURE_ID "]"; + + + + +#if !defined(__STDC__) +# if defined(_MSC_VER) && !defined(__clang__) +# define C_DIALECT "90" +# else +# define C_DIALECT +# endif +#elif __STDC_VERSION__ >= 201000L +# define C_DIALECT "11" +#elif __STDC_VERSION__ >= 199901L +# define C_DIALECT "99" +#else +# define C_DIALECT "90" +#endif +const char* info_language_dialect_default = + "INFO" ":" "dialect_default[" C_DIALECT "]"; + +/*--------------------------------------------------------------------------*/ + +#ifdef ID_VOID_MAIN +void main() {} +#else +# if defined(__CLASSIC_C__) +int main(argc, argv) int argc; char *argv[]; +# else +int main(int argc, char* argv[]) +# endif +{ + int require = 0; + require += info_compiler[argc]; + require += info_platform[argc]; + require += info_arch[argc]; +#ifdef COMPILER_VERSION_MAJOR + require += info_version[argc]; +#endif +#ifdef SIMULATE_ID + require += info_simulate[argc]; +#endif +#ifdef SIMULATE_VERSION_MAJOR + require += info_simulate_version[argc]; +#endif +#if defined(__CRAYXE) || defined(__CRAYXC) + require += info_cray[argc]; +#endif + require += info_language_dialect_default[argc]; + (void)argv; + return require; +} +#endif diff --git a/example/luatest/lib/build/CMakeFiles/3.9.2/CompilerIdC/a.out b/example/luatest/lib/build/CMakeFiles/3.9.2/CompilerIdC/a.out Binary files differnew file mode 100755 index 0000000..f6fc107 --- /dev/null +++ b/example/luatest/lib/build/CMakeFiles/3.9.2/CompilerIdC/a.out diff --git a/example/luatest/lib/build/CMakeFiles/3.9.2/CompilerIdCXX/CMakeCXXCompilerId.cpp b/example/luatest/lib/build/CMakeFiles/3.9.2/CompilerIdCXX/CMakeCXXCompilerId.cpp new file mode 100644 index 0000000..e7037e5 --- /dev/null +++ b/example/luatest/lib/build/CMakeFiles/3.9.2/CompilerIdCXX/CMakeCXXCompilerId.cpp @@ -0,0 +1,539 @@ +/* This source file must have a .cpp extension so that all C++ compilers + recognize the extension without flags. Borland does not know .cxx for + example. */ +#ifndef __cplusplus +# error "A C compiler has been selected for C++." +#endif + + +/* Version number components: V=Version, R=Revision, P=Patch + Version date components: YYYY=Year, MM=Month, DD=Day */ + +#if defined(__COMO__) +# define COMPILER_ID "Comeau" + /* __COMO_VERSION__ = VRR */ +# define COMPILER_VERSION_MAJOR DEC(__COMO_VERSION__ / 100) +# define COMPILER_VERSION_MINOR DEC(__COMO_VERSION__ % 100) + +#elif defined(__INTEL_COMPILER) || defined(__ICC) +# define COMPILER_ID "Intel" +# if defined(_MSC_VER) +# define SIMULATE_ID "MSVC" +# endif + /* __INTEL_COMPILER = VRP */ +# define COMPILER_VERSION_MAJOR DEC(__INTEL_COMPILER/100) +# define COMPILER_VERSION_MINOR DEC(__INTEL_COMPILER/10 % 10) +# if defined(__INTEL_COMPILER_UPDATE) +# define COMPILER_VERSION_PATCH DEC(__INTEL_COMPILER_UPDATE) +# else +# define COMPILER_VERSION_PATCH DEC(__INTEL_COMPILER % 10) +# endif +# if defined(__INTEL_COMPILER_BUILD_DATE) + /* __INTEL_COMPILER_BUILD_DATE = YYYYMMDD */ +# define COMPILER_VERSION_TWEAK DEC(__INTEL_COMPILER_BUILD_DATE) +# endif +# if defined(_MSC_VER) + /* _MSC_VER = VVRR */ +# define SIMULATE_VERSION_MAJOR DEC(_MSC_VER / 100) +# define SIMULATE_VERSION_MINOR DEC(_MSC_VER % 100) +# endif + +#elif defined(__PATHCC__) +# define COMPILER_ID "PathScale" +# define COMPILER_VERSION_MAJOR DEC(__PATHCC__) +# define COMPILER_VERSION_MINOR DEC(__PATHCC_MINOR__) +# if defined(__PATHCC_PATCHLEVEL__) +# define COMPILER_VERSION_PATCH DEC(__PATHCC_PATCHLEVEL__) +# endif + +#elif defined(__BORLANDC__) && defined(__CODEGEARC_VERSION__) +# define COMPILER_ID "Embarcadero" +# define COMPILER_VERSION_MAJOR HEX(__CODEGEARC_VERSION__>>24 & 0x00FF) +# define COMPILER_VERSION_MINOR HEX(__CODEGEARC_VERSION__>>16 & 0x00FF) +# define COMPILER_VERSION_PATCH DEC(__CODEGEARC_VERSION__ & 0xFFFF) + +#elif defined(__BORLANDC__) +# define COMPILER_ID "Borland" + /* __BORLANDC__ = 0xVRR */ +# define COMPILER_VERSION_MAJOR HEX(__BORLANDC__>>8) +# define COMPILER_VERSION_MINOR HEX(__BORLANDC__ & 0xFF) + +#elif defined(__WATCOMC__) && __WATCOMC__ < 1200 +# define COMPILER_ID "Watcom" + /* __WATCOMC__ = VVRR */ +# define COMPILER_VERSION_MAJOR DEC(__WATCOMC__ / 100) +# define COMPILER_VERSION_MINOR DEC((__WATCOMC__ / 10) % 10) +# if (__WATCOMC__ % 10) > 0 +# define COMPILER_VERSION_PATCH DEC(__WATCOMC__ % 10) +# endif + +#elif defined(__WATCOMC__) +# define COMPILER_ID "OpenWatcom" + /* __WATCOMC__ = VVRP + 1100 */ +# define COMPILER_VERSION_MAJOR DEC((__WATCOMC__ - 1100) / 100) +# define COMPILER_VERSION_MINOR DEC((__WATCOMC__ / 10) % 10) +# if (__WATCOMC__ % 10) > 0 +# define COMPILER_VERSION_PATCH DEC(__WATCOMC__ % 10) +# endif + +#elif defined(__SUNPRO_CC) +# define COMPILER_ID "SunPro" +# if __SUNPRO_CC >= 0x5100 + /* __SUNPRO_CC = 0xVRRP */ +# define COMPILER_VERSION_MAJOR HEX(__SUNPRO_CC>>12) +# define COMPILER_VERSION_MINOR HEX(__SUNPRO_CC>>4 & 0xFF) +# define COMPILER_VERSION_PATCH HEX(__SUNPRO_CC & 0xF) +# else + /* __SUNPRO_CC = 0xVRP */ +# define COMPILER_VERSION_MAJOR HEX(__SUNPRO_CC>>8) +# define COMPILER_VERSION_MINOR HEX(__SUNPRO_CC>>4 & 0xF) +# define COMPILER_VERSION_PATCH HEX(__SUNPRO_CC & 0xF) +# endif + +#elif defined(__HP_aCC) +# define COMPILER_ID "HP" + /* __HP_aCC = VVRRPP */ +# define COMPILER_VERSION_MAJOR DEC(__HP_aCC/10000) +# define COMPILER_VERSION_MINOR DEC(__HP_aCC/100 % 100) +# define COMPILER_VERSION_PATCH DEC(__HP_aCC % 100) + +#elif defined(__DECCXX) +# define COMPILER_ID "Compaq" + /* __DECCXX_VER = VVRRTPPPP */ +# define COMPILER_VERSION_MAJOR DEC(__DECCXX_VER/10000000) +# define COMPILER_VERSION_MINOR DEC(__DECCXX_VER/100000 % 100) +# define COMPILER_VERSION_PATCH DEC(__DECCXX_VER % 10000) + +#elif defined(__IBMCPP__) && defined(__COMPILER_VER__) +# define COMPILER_ID "zOS" + /* __IBMCPP__ = VRP */ +# define COMPILER_VERSION_MAJOR DEC(__IBMCPP__/100) +# define COMPILER_VERSION_MINOR DEC(__IBMCPP__/10 % 10) +# define COMPILER_VERSION_PATCH DEC(__IBMCPP__ % 10) + +#elif defined(__IBMCPP__) && !defined(__COMPILER_VER__) && __IBMCPP__ >= 800 +# define COMPILER_ID "XL" + /* __IBMCPP__ = VRP */ +# define COMPILER_VERSION_MAJOR DEC(__IBMCPP__/100) +# define COMPILER_VERSION_MINOR DEC(__IBMCPP__/10 % 10) +# define COMPILER_VERSION_PATCH DEC(__IBMCPP__ % 10) + +#elif defined(__IBMCPP__) && !defined(__COMPILER_VER__) && __IBMCPP__ < 800 +# define COMPILER_ID "VisualAge" + /* __IBMCPP__ = VRP */ +# define COMPILER_VERSION_MAJOR DEC(__IBMCPP__/100) +# define COMPILER_VERSION_MINOR DEC(__IBMCPP__/10 % 10) +# define COMPILER_VERSION_PATCH DEC(__IBMCPP__ % 10) + +#elif defined(__PGI) +# define COMPILER_ID "PGI" +# define COMPILER_VERSION_MAJOR DEC(__PGIC__) +# define COMPILER_VERSION_MINOR DEC(__PGIC_MINOR__) +# if defined(__PGIC_PATCHLEVEL__) +# define COMPILER_VERSION_PATCH DEC(__PGIC_PATCHLEVEL__) +# endif + +#elif defined(_CRAYC) +# define COMPILER_ID "Cray" +# define COMPILER_VERSION_MAJOR DEC(_RELEASE_MAJOR) +# define COMPILER_VERSION_MINOR DEC(_RELEASE_MINOR) + +#elif defined(__TI_COMPILER_VERSION__) +# define COMPILER_ID "TI" + /* __TI_COMPILER_VERSION__ = VVVRRRPPP */ +# define COMPILER_VERSION_MAJOR DEC(__TI_COMPILER_VERSION__/1000000) +# define COMPILER_VERSION_MINOR DEC(__TI_COMPILER_VERSION__/1000 % 1000) +# define COMPILER_VERSION_PATCH DEC(__TI_COMPILER_VERSION__ % 1000) + +#elif defined(__FUJITSU) || defined(__FCC_VERSION) || defined(__fcc_version) +# define COMPILER_ID "Fujitsu" + +#elif defined(__SCO_VERSION__) +# define COMPILER_ID "SCO" + +#elif defined(__clang__) && defined(__apple_build_version__) +# define COMPILER_ID "AppleClang" +# if defined(_MSC_VER) +# define SIMULATE_ID "MSVC" +# endif +# define COMPILER_VERSION_MAJOR DEC(__clang_major__) +# define COMPILER_VERSION_MINOR DEC(__clang_minor__) +# define COMPILER_VERSION_PATCH DEC(__clang_patchlevel__) +# if defined(_MSC_VER) + /* _MSC_VER = VVRR */ +# define SIMULATE_VERSION_MAJOR DEC(_MSC_VER / 100) +# define SIMULATE_VERSION_MINOR DEC(_MSC_VER % 100) +# endif +# define COMPILER_VERSION_TWEAK DEC(__apple_build_version__) + +#elif defined(__clang__) +# define COMPILER_ID "Clang" +# if defined(_MSC_VER) +# define SIMULATE_ID "MSVC" +# endif +# define COMPILER_VERSION_MAJOR DEC(__clang_major__) +# define COMPILER_VERSION_MINOR DEC(__clang_minor__) +# define COMPILER_VERSION_PATCH DEC(__clang_patchlevel__) +# if defined(_MSC_VER) + /* _MSC_VER = VVRR */ +# define SIMULATE_VERSION_MAJOR DEC(_MSC_VER / 100) +# define SIMULATE_VERSION_MINOR DEC(_MSC_VER % 100) +# endif + +#elif defined(__GNUC__) || defined(__GNUG__) +# define COMPILER_ID "GNU" +# if defined(__GNUC__) +# define COMPILER_VERSION_MAJOR DEC(__GNUC__) +# else +# define COMPILER_VERSION_MAJOR DEC(__GNUG__) +# endif +# if defined(__GNUC_MINOR__) +# define COMPILER_VERSION_MINOR DEC(__GNUC_MINOR__) +# endif +# if defined(__GNUC_PATCHLEVEL__) +# define COMPILER_VERSION_PATCH DEC(__GNUC_PATCHLEVEL__) +# endif + +#elif defined(_MSC_VER) +# define COMPILER_ID "MSVC" + /* _MSC_VER = VVRR */ +# define COMPILER_VERSION_MAJOR DEC(_MSC_VER / 100) +# define COMPILER_VERSION_MINOR DEC(_MSC_VER % 100) +# if defined(_MSC_FULL_VER) +# if _MSC_VER >= 1400 + /* _MSC_FULL_VER = VVRRPPPPP */ +# define COMPILER_VERSION_PATCH DEC(_MSC_FULL_VER % 100000) +# else + /* _MSC_FULL_VER = VVRRPPPP */ +# define COMPILER_VERSION_PATCH DEC(_MSC_FULL_VER % 10000) +# endif +# endif +# if defined(_MSC_BUILD) +# define COMPILER_VERSION_TWEAK DEC(_MSC_BUILD) +# endif + +#elif defined(__VISUALDSPVERSION__) || defined(__ADSPBLACKFIN__) || defined(__ADSPTS__) || defined(__ADSP21000__) +# define COMPILER_ID "ADSP" +#if defined(__VISUALDSPVERSION__) + /* __VISUALDSPVERSION__ = 0xVVRRPP00 */ +# define COMPILER_VERSION_MAJOR HEX(__VISUALDSPVERSION__>>24) +# define COMPILER_VERSION_MINOR HEX(__VISUALDSPVERSION__>>16 & 0xFF) +# define COMPILER_VERSION_PATCH HEX(__VISUALDSPVERSION__>>8 & 0xFF) +#endif + +#elif defined(__IAR_SYSTEMS_ICC__ ) || defined(__IAR_SYSTEMS_ICC) +# define COMPILER_ID "IAR" + +#elif defined(__ARMCC_VERSION) +# define COMPILER_ID "ARMCC" +#if __ARMCC_VERSION >= 1000000 + /* __ARMCC_VERSION = VRRPPPP */ + # define COMPILER_VERSION_MAJOR DEC(__ARMCC_VERSION/1000000) + # define COMPILER_VERSION_MINOR DEC(__ARMCC_VERSION/10000 % 100) + # define COMPILER_VERSION_PATCH DEC(__ARMCC_VERSION % 10000) +#else + /* __ARMCC_VERSION = VRPPPP */ + # define COMPILER_VERSION_MAJOR DEC(__ARMCC_VERSION/100000) + # define COMPILER_VERSION_MINOR DEC(__ARMCC_VERSION/10000 % 10) + # define COMPILER_VERSION_PATCH DEC(__ARMCC_VERSION % 10000) +#endif + + +#elif defined(_SGI_COMPILER_VERSION) || defined(_COMPILER_VERSION) +# define COMPILER_ID "MIPSpro" +# if defined(_SGI_COMPILER_VERSION) + /* _SGI_COMPILER_VERSION = VRP */ +# define COMPILER_VERSION_MAJOR DEC(_SGI_COMPILER_VERSION/100) +# define COMPILER_VERSION_MINOR DEC(_SGI_COMPILER_VERSION/10 % 10) +# define COMPILER_VERSION_PATCH DEC(_SGI_COMPILER_VERSION % 10) +# else + /* _COMPILER_VERSION = VRP */ +# define COMPILER_VERSION_MAJOR DEC(_COMPILER_VERSION/100) +# define COMPILER_VERSION_MINOR DEC(_COMPILER_VERSION/10 % 10) +# define COMPILER_VERSION_PATCH DEC(_COMPILER_VERSION % 10) +# endif + + +/* These compilers are either not known or too old to define an + identification macro. Try to identify the platform and guess that + it is the native compiler. */ +#elif defined(__sgi) +# define COMPILER_ID "MIPSpro" + +#elif defined(__hpux) || defined(__hpua) +# define COMPILER_ID "HP" + +#else /* unknown compiler */ +# define COMPILER_ID "" +#endif + +/* Construct the string literal in pieces to prevent the source from + getting matched. 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This is because + the compilers do not have flags that can change the architecture, + but rather depend on which compiler is being used +*/ +#if defined(_WIN32) && defined(_MSC_VER) +# if defined(_M_IA64) +# define ARCHITECTURE_ID "IA64" + +# elif defined(_M_X64) || defined(_M_AMD64) +# define ARCHITECTURE_ID "x64" + +# elif defined(_M_IX86) +# define ARCHITECTURE_ID "X86" + +# elif defined(_M_ARM) +# if _M_ARM == 4 +# define ARCHITECTURE_ID "ARMV4I" +# elif _M_ARM == 5 +# define ARCHITECTURE_ID "ARMV5I" +# else +# define ARCHITECTURE_ID "ARMV" STRINGIFY(_M_ARM) +# endif + +# elif defined(_M_MIPS) +# define ARCHITECTURE_ID "MIPS" + +# elif defined(_M_SH) +# define ARCHITECTURE_ID "SHx" + +# else /* unknown architecture */ +# define ARCHITECTURE_ID "" +# endif + +#elif defined(__WATCOMC__) +# if defined(_M_I86) +# define ARCHITECTURE_ID "I86" + +# elif defined(_M_IX86) +# define ARCHITECTURE_ID "X86" + +# else /* unknown architecture */ +# define ARCHITECTURE_ID "" +# endif + +#else +# define ARCHITECTURE_ID +#endif + +/* Convert integer to decimal digit literals. */ +#define DEC(n) \ + ('0' + (((n) / 10000000)%10)), \ + ('0' + (((n) / 1000000)%10)), \ + ('0' + (((n) / 100000)%10)), \ + ('0' + (((n) / 10000)%10)), \ + ('0' + (((n) / 1000)%10)), \ + ('0' + (((n) / 100)%10)), \ + ('0' + (((n) / 10)%10)), \ + ('0' + ((n) % 10)) + +/* Convert integer to hex digit literals. */ +#define HEX(n) \ + ('0' + ((n)>>28 & 0xF)), \ + ('0' + ((n)>>24 & 0xF)), \ + ('0' + ((n)>>20 & 0xF)), \ + ('0' + ((n)>>16 & 0xF)), \ + ('0' + ((n)>>12 & 0xF)), \ + ('0' + ((n)>>8 & 0xF)), \ + ('0' + ((n)>>4 & 0xF)), \ + ('0' + ((n) & 0xF)) + +/* Construct a string literal encoding the version number components. */ +#ifdef COMPILER_VERSION_MAJOR +char const info_version[] = { + 'I', 'N', 'F', 'O', ':', + 'c','o','m','p','i','l','e','r','_','v','e','r','s','i','o','n','[', + COMPILER_VERSION_MAJOR, +# ifdef COMPILER_VERSION_MINOR + '.', COMPILER_VERSION_MINOR, +# ifdef COMPILER_VERSION_PATCH + '.', COMPILER_VERSION_PATCH, +# ifdef COMPILER_VERSION_TWEAK + '.', COMPILER_VERSION_TWEAK, +# endif +# endif +# endif + ']','\0'}; +#endif + +/* Construct a string literal encoding the version number components. */ +#ifdef SIMULATE_VERSION_MAJOR +char const info_simulate_version[] = { + 'I', 'N', 'F', 'O', ':', + 's','i','m','u','l','a','t','e','_','v','e','r','s','i','o','n','[', + SIMULATE_VERSION_MAJOR, +# ifdef SIMULATE_VERSION_MINOR + '.', SIMULATE_VERSION_MINOR, +# ifdef SIMULATE_VERSION_PATCH + '.', SIMULATE_VERSION_PATCH, +# ifdef SIMULATE_VERSION_TWEAK + '.', SIMULATE_VERSION_TWEAK, +# endif +# endif +# endif + ']','\0'}; +#endif + +/* Construct the string literal in pieces to prevent the source from + getting matched. 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+#include<arpa/inet.h> +} +extern "C" int c_handle_function(const u_char *packet, uint32_t packet_len, const char *feature, char *result ) +{ + const u_char *locate = NULL; + uint32_t cnt = 0; + int rest_len = packet_len; + int feature_len = strlen(feature); + if ((packet == NULL) || (feature == NULL) || (result == NULL) || (packet_len == 0) || (feature_len == 0)) + { + return -1; + } + locate = packet; + while(feature_len <= rest_len) + { +#if 0 + locate = (const u_char *)memchr(locate, feature[0], rest_len); + if (!locate) + { + break; + } + if ((feature_len == 1) || (memcmp((const u_char *)locate, feature, feature_len) == 0)) + { + cnt++; + } + locate++; + rest_len = packet_len - (locate - packet); +#else + locate = (const u_char *)memmem((const char *)locate, rest_len, feature, feature_len); + if (!locate) + { + break; + } + cnt++; + locate++; + rest_len = packet_len - (locate - packet); +#endif + + } + + sprintf(result, "count:%d", cnt); + + return 0; +} diff --git a/example/luatest/lib/handle_fasta_find.cpp b/example/luatest/lib/handle_fasta_find.cpp new file mode 100644 index 0000000..a3dcdee --- /dev/null +++ b/example/luatest/lib/handle_fasta_find.cpp @@ -0,0 +1,32 @@ +/************************************************************************* + > File Name: handle_fasta.cpp + > Author: pxz + > Created Time: Tue 11 Aug 2020 04:50:52 AM CST + ************************************************************************/ +extern "C" +{ +#include<stdio.h> +#include<string.h> +#include<stdint.h> +#include<arpa/inet.h> +} + +extern "C" int c_handle_function(const u_char *packet, uint32_t packet_len, const char *feature, char *result ) +{ + const u_char *locate = NULL; + + if ((packet == NULL) || (feature == NULL) || (result == NULL) || (packet_len == 0)) + { + return -1; + } + + locate = (const u_char *)memmem((const char *)packet, packet_len, feature, strlen(feature)); + if (locate == NULL) + { + sprintf(result, "not find"); + }else + { + sprintf(result, "find"); + } + return 0; +} diff --git a/example/luatest/lib/handle_weixinnum.cpp b/example/luatest/lib/handle_weixinnum.cpp new file mode 100644 index 0000000..4624047 --- /dev/null +++ b/example/luatest/lib/handle_weixinnum.cpp @@ -0,0 +1,56 @@ +/************************************************************************* + > File Name: handle_weixinhao.cpp + > Author: pxz + > Created Time: Sun 09 Aug 2020 07:04:28 AM CST + ************************************************************************/ +extern "C" +{ +#include<stdio.h> +#include<stdlib.h> +#include<stdint.h> +#include<string.h> +#include<arpa/inet.h> +} + +extern "C" int c_handle_function(const u_char *packet, uint32_t packet_len, const char *feature, char *result) +{ +#define WEIXINNUM_NAME_LEN 4 +#define WEIXINNUM_NAME 9 +#define WEIXINNUM_LEN 4 +#define WEIXINNUM 11 + uint32_t necessary_len; + uint32_t i; + const u_char *pweixinnum = NULL; + const u_char *pweixinnum_name = NULL; + uint32_t weixinnum_len; + + necessary_len = WEIXINNUM_NAME_LEN + WEIXINNUM_NAME + WEIXINNUM_LEN + WEIXINNUM; + if (packet_len < necessary_len) + { + return -1; + } + pweixinnum_name = (const u_char *)memmem(packet, packet_len, feature, strlen(feature)); + if (pweixinnum_name == NULL) + { + return -1; + } + + weixinnum_len = *(uint32_t*)(pweixinnum_name + WEIXINNUM_NAME); + weixinnum_len = ntohl(weixinnum_len); + if (weixinnum_len > 12) + { + return -1; + } + pweixinnum = pweixinnum_name + WEIXINNUM_NAME + WEIXINNUM_LEN; + memcpy(result, pweixinnum, weixinnum_len); + result[weixinnum_len] = '\0'; + for (i = 0; i < weixinnum_len; i++) + { + if (!(result[i] <= '9' && result[i] >= '0')) + { + return -1; + } + } + + return 0; +} diff --git a/example/luatest/lib/libc_handle_weixinnum.a b/example/luatest/lib/libc_handle_weixinnum.a Binary files differnew file mode 100644 index 0000000..1f51d96 --- /dev/null +++ b/example/luatest/lib/libc_handle_weixinnum.a diff --git a/example/luatest/lib/libc_handle_weixinnum.so b/example/luatest/lib/libc_handle_weixinnum.so Binary files differnew file mode 100755 index 0000000..9c20562 --- /dev/null +++ b/example/luatest/lib/libc_handle_weixinnum.so diff --git a/example/luatest/lib/libhandle_fasta_count.a b/example/luatest/lib/libhandle_fasta_count.a Binary files differnew file mode 100644 index 0000000..6c360d3 --- /dev/null +++ b/example/luatest/lib/libhandle_fasta_count.a diff --git a/example/luatest/lib/libhandle_fasta_count.so b/example/luatest/lib/libhandle_fasta_count.so Binary files differnew file mode 100755 index 0000000..dc34da8 --- /dev/null +++ b/example/luatest/lib/libhandle_fasta_count.so diff --git a/example/luatest/lib/libhandle_fasta_find.a b/example/luatest/lib/libhandle_fasta_find.a Binary files differnew file mode 100644 index 0000000..85ada18 --- /dev/null +++ b/example/luatest/lib/libhandle_fasta_find.a diff --git a/example/luatest/lib/libhandle_fasta_find.so b/example/luatest/lib/libhandle_fasta_find.so Binary files differnew file mode 100755 index 0000000..60c6ac0 --- /dev/null +++ b/example/luatest/lib/libhandle_fasta_find.so diff --git a/example/luatest/luatest b/example/luatest/luatest Binary files differnew file mode 100755 index 0000000..3d7496f --- /dev/null +++ b/example/luatest/luatest diff --git a/example/luatest/luatest.cpp b/example/luatest/luatest.cpp new file mode 100644 index 0000000..5b3dd99 --- /dev/null +++ b/example/luatest/luatest.cpp @@ -0,0 +1,986 @@ +/************************************************************************* + > File Name: main.cpp + > Author: pxz + > Created Time: Sun 02 Aug 2020 11:41:22 AM CST + ************************************************************************/ +extern "C" +{ +#include<stdio.h> +#include<pcap.h> +#include<stdint.h> +#include<string.h> +#include<arpa/inet.h> +#include<time.h> +#include<unistd.h> +#include<pthread.h> +#include<stdlib.h> +#include<dlfcn.h> +#include<sys/types.h> +#include<sys/stat.h> +#include<dirent.h> +} +#include<tcmalloc.h> +#include"tsg_lua_interface.h" + + +#define MAC_FRAME_HEADER_LEN 14 +#define IP_HEADER_LEN 20 +#define TCP_HEADER_LEN 20 + +#ifndef MAX_THREAD_NUM +#define MAX_THREAD_NUM 16 +#endif + +#ifndef MIN +#define MIN(a, b) ((a) > (b) ?(b):(a)) +#endif + +#define TSG_LUA_LOOP_TIMES 10000 + +int c_pcap_flag[MAX_THREAD_NUM]; +int c_text_flag[MAX_THREAD_NUM]; +int lua_pcap_flag[MAX_THREAD_NUM]; +int lua_text_flag[MAX_THREAD_NUM]; + +typedef int (*c_handle_function)(const u_char *packet, uint32_t packet_len, const char *feature, char *result); +enum { + text_type = 0x01, + pcap_type = 0x02 +}; +typedef struct c_thread_info_s{ + size_t thread_id; + const char *lib; + const char *input; + const char *feature; + uint8_t file_type; +}c_thread_info_t; + +typedef struct c_pcap_info_s{ + c_handle_function c_handle; + size_t thread_id; + uint32_t packet_num; + uint64_t total_time; + const char *feature; + const char *debuginfo; +}c_pcap_info_t; + +typedef struct c_text_info_s{ + c_handle_function c_handle; + size_t thread_id; + uint64_t total_time; + const char *feature; + const char *file_name; + const char *debuginfo; +}c_text_info_t; + +typedef struct lua_thread_info_s{ + size_t thread_id; + const char *script; + const char *input; + const char *feature; + uint8_t file_type; +}lua_thread_info_t; + +typedef struct lua_pacp_info_s +{ + tsg_lua_handle L; + size_t script_id; + size_t thread_id; + uint32_t packet_num; + uint64_t total_time; + const char *feature; + char *debuginfo; +}lua_pcap_info_t; + +typedef struct lua_text_info_s +{ + tsg_lua_handle L; + size_t script_id; + size_t thread_id; + uint64_t total_time; + const char *feature; + const char *file_name; + char *debuginfo; +}lua_text_info_t; + +typedef struct conf_t +{ + uint32_t thread_num; + char feature[1024]; + char input[128]; + char script[128]; + char lib[128]; + uint8_t file_type; + uint8_t complete; +#define THREAD_NUM_COMPLETE 0x01 +#define FEATURE_COMPLETE 0x02 +#define INPUT_COMPLETE 0x04 +#define SCRIPT_COMPLETE 0x08 +#define LIB_COMPLETE 0x10 +#define FILE_TYPE_COMPLETE 0x20 +#define ALL_COMPLETE (THREAD_NUM_COMPLETE | FEATURE_COMPLETE | INPUT_COMPLETE | SCRIPT_COMPLETE | LIB_COMPLETE | FILE_TYPE_COMPLETE) +}conf_t; + +int read_file_list(const char *path, char file_name[][256]) +{ + DIR *dir; + struct dirent *ptr; + int path_len = strlen(path); + int file_num = 0; + + if ((dir=opendir(path)) == NULL) + { + perror("Open dir error..."); + exit(-1); + } + + while (((ptr=readdir(dir)) != NULL) && (file_num < 100)) + { + if(strcmp(ptr->d_name,".")==0 || strcmp(ptr->d_name,"..")==0) ///current dir OR parrent dir + continue; + else if((ptr->d_type == 8) || (ptr->d_type == 10)) + { + memcpy(file_name[file_num], path, path_len); + strcat(file_name[file_num], ptr->d_name); + } + else if(ptr->d_type == 4) ///dir + { + continue; + } + file_num++; + } + closedir(dir); + return 0; +} + +static int init_conf(char *path, conf_t *conf) +{ + char buf[1024]; + size_t buf_len = sizeof(buf); + FILE *fp = fopen(path, "r"); + if (fp == NULL) + { + perror("error opening file"); + return -1; + } + while(fgets(buf, buf_len, fp) != NULL) + { + switch(buf[0]) + { + case '#': + case '\n': + break; + case '/': + if (buf[1] == '*') + { + while(fgets(buf, buf_len, fp) != NULL) + { + if ((buf[0] == '*') && (buf[1] == '/') && ((buf[3] == '\0') || (buf[3] == '\n'))) + break; + } + }else + { + printf("error:unknow conf\n"); + return -1; + } + break; + case 't': + if (conf->complete & THREAD_NUM_COMPLETE) + { + break; + } + if ((sscanf(buf, "thread_num %d", &conf->thread_num) == EOF) || (conf->thread_num == 0)) + { + printf("error: conf_file: thread_num error\n"); + return -1; + } + conf->complete |= THREAD_NUM_COMPLETE; + break; + case 'f': + if (conf->complete & FEATURE_COMPLETE) + { + if (conf->complete & FILE_TYPE_COMPLETE) + { + break; + }else + { + /* file type */ + if ((sscanf(buf, "file_type %hhd", &conf->file_type) == EOF) ) + { + printf("error: conf_file: feature error\n"); + return -1; + }else + { + if ((conf->file_type != text_type) && (conf->file_type != pcap_type)) + { + return -1; + } + conf->complete |= FILE_TYPE_COMPLETE; + break; + } + } + } + if ((sscanf(buf, "feature %s", conf->feature) == EOF) || (strlen(conf->feature) == 0)) + { + printf("error: conf_file: feature error\n"); + return -1; + } + conf->complete |= FEATURE_COMPLETE; + break; + case 'i': + if (conf->complete & INPUT_COMPLETE) + { + break; + } + if ((sscanf(buf, "input %s", conf->input) == EOF) || strlen(conf->input) == 0) + { + printf("error: conf_file: input error\n"); + return -1; + } + conf->complete |= INPUT_COMPLETE; + break; + case 's': + if (conf->complete & SCRIPT_COMPLETE) + { + break; + } + if ((sscanf(buf, "script %s", conf->script) == EOF) || (strlen(conf->script) == 0)) + { + printf("error: conf_file: script error\n"); + return -1; + } + conf->complete |= SCRIPT_COMPLETE; + break; + case 'l': + if (conf->complete & LIB_COMPLETE) + { + break; + } + if ((sscanf(buf, "lib %s", conf->lib) == EOF) || (strlen(conf->lib) == 0)) + { + printf("error: conf_file: lib error\n"); + return -1; + } + conf->complete |= LIB_COMPLETE; + break; + default: + printf("error:unknow conf\n"); + return -1; + } + } + fclose(fp); + if (conf->complete == ALL_COMPLETE ) + { + return 0; + } + printf("configure not complete\n"); + return -1; +} + +static uint64_t calc_time(struct timespec start, struct timespec end) +{ + return (end.tv_sec * 1000 * 1000 * 1000 + end.tv_nsec - + (start.tv_sec * 1000 * 1000 * 1000 + start.tv_nsec)); +} + +int file_to_buffer(const char *file, char *buffer, size_t *len) +{ + FILE *fp = fopen(file, "r"); + int num = 0; + *len = 0; + if (fp == NULL) + { + printf("fopen file failed\n"); + return -1; + } + do{ + num = fread(&buffer[*len], 1, 4096, fp); + if (num < 0) + { + return -1; + } + *len += num; + }while(num == 4096); + fclose(fp); + return 0; +} + +void c_pcap_handle(u_char *userarg, const struct pcap_pkthdr *pkthdr, const u_char *packet) +{ + struct timespec time_start, time_end; + uint32_t i = 0; + c_pcap_info_t *pcap_info = (c_pcap_info_t *)userarg; + uint64_t time = 0; + char result[512]; + int debuginfo_len; + const u_char *tcp_payload; + int tcp_payload_len; + + pcap_info->packet_num++; + if (pkthdr->caplen <= MAC_FRAME_HEADER_LEN + IP_HEADER_LEN + TCP_HEADER_LEN) + { + return ; + } + tcp_payload = packet + MAC_FRAME_HEADER_LEN + IP_HEADER_LEN + TCP_HEADER_LEN; + tcp_payload_len = pkthdr->caplen - MAC_FRAME_HEADER_LEN - IP_HEADER_LEN - TCP_HEADER_LEN; + + /* 首次运行重复三次再取时间 */ + while(c_pcap_flag[pcap_info->thread_id] != 3) + { + memset(result, 0, sizeof(result)); + for(i = 0; i < TSG_LUA_LOOP_TIMES; i++) + { + pcap_info->c_handle(tcp_payload, tcp_payload_len, pcap_info->feature, result); + } + c_pcap_flag[pcap_info->thread_id]++; + } + + memset(result, 0, sizeof(result)); + clock_gettime(CLOCK_MONOTONIC, &time_start); + for(i = 0; i < TSG_LUA_LOOP_TIMES; i++) + { + pcap_info->c_handle(tcp_payload, tcp_payload_len, pcap_info->feature, result); + } + clock_gettime(CLOCK_MONOTONIC, &time_end); + time += calc_time(time_start, time_end); + time /= TSG_LUA_LOOP_TIMES; + pcap_info->total_time += time; + + debuginfo_len = strlen(pcap_info->debuginfo); + if (debuginfo_len < 9500) + { + sprintf((char *)&pcap_info->debuginfo[debuginfo_len], "%-10s%-10ld%-11d%-20s%-20s%-20ld%-20ld\n", + "C", pcap_info->thread_id, pcap_info->packet_num, pcap_info->feature, result, time, pcap_info->total_time); + } + return; +} + +static void c_text_handle(c_text_info_t *text_info, char *debuginfo) +{ + char buffer[1024 * 1024]; + size_t buffer_len; + char result[512]; + struct timespec time_start, time_end; + uint64_t time; + int i; + const char *file_name; + + if ((text_info == NULL) || (debuginfo == NULL)) + { + return ; + } + + /* 普通文件处理 */ + if (file_to_buffer(text_info->file_name, buffer, &buffer_len)) + { + return; + } + /* 首次运行重复三次再取时间 */ + while(c_text_flag[text_info->thread_id] != 3) + { + memset(result, 0, sizeof(result)); + for(i = 0; i < TSG_LUA_LOOP_TIMES; i++) + { + text_info->c_handle((const u_char *)buffer, buffer_len, text_info->feature, result); + } + c_text_flag[text_info->thread_id]++; + } + + clock_gettime(CLOCK_MONOTONIC, &time_start); + for (i = 0; i < TSG_LUA_LOOP_TIMES; i ++) + { + if (text_info->c_handle((const u_char *)buffer, buffer_len, text_info->feature, result)) + { + return; + } + } + clock_gettime(CLOCK_MONOTONIC, &time_end); + time = calc_time(time_start, time_end); + time /= TSG_LUA_LOOP_TIMES; + text_info->total_time += time; + + file_name = (const char *)memrchr(text_info->file_name, '/', strlen(text_info->file_name)); + if (file_name == NULL) + { + file_name = text_info->file_name; + }else + { + file_name++; + } + + sprintf(&debuginfo[strlen(debuginfo)], "%-10s%-10ld%-20s%-20s%-20s%-20ld%-20ld\n", + "C", text_info->thread_id, file_name, text_info->feature, result, time, text_info->total_time); + return; +} + +static void c_pcap_prefix_handle(c_thread_info_t *thread_info, char *debuginfo, c_handle_function c_handle ) +{ + char ebuf[PCAP_ERRBUF_SIZE]; + c_pcap_info_t pcap_info; + pcap_t *pcap_handle; + + if ((thread_info == NULL) || (debuginfo == NULL) || (c_handle == NULL)) + { + return ; + } + /* pcap 文件处理 */ + if (thread_info->file_type & pcap_type) + { + pcap_handle = pcap_open_offline(thread_info->input, ebuf); + if (pcap_handle == NULL) + { + printf("input is error\n"); + return ; + } + + pcap_info.feature = thread_info->feature; + pcap_info.c_handle = c_handle; + pcap_info.debuginfo = debuginfo; + pcap_info.packet_num = 0; + pcap_info.total_time = 0; + pcap_info.thread_id = thread_info->thread_id; + + pcap_loop(pcap_handle, -1, c_pcap_handle, (u_char *)&pcap_info); + pcap_close(pcap_handle); + + } + return ; +} + +static void *c_file_handle(void *ptr) +{ + c_thread_info_t *thread_info = (c_thread_info_t *)ptr; + char *debuginfo; + void *lib_handle = NULL; + c_handle_function c_handle; + uint32_t i; + struct stat s_buf; + char file_name[100][256]; + c_text_info_t text_info; + + debuginfo = (char *)tc_malloc(10240); + if (debuginfo == NULL) + { + perror(" "); + pthread_exit(NULL); + } + memset(debuginfo, 0, 10240); + + lib_handle = dlopen(thread_info->lib, RTLD_LAZY); + if (lib_handle == NULL) + { + fprintf (stderr, "%s\n", dlerror()); + pthread_exit(debuginfo); + } + + c_handle = (c_handle_function)dlsym(lib_handle, "c_handle_function"); + if (c_handle == NULL) + { + fprintf (stderr, "%s\n", dlerror()); + dlclose(lib_handle); + pthread_exit(debuginfo); + } + + text_info.thread_id = thread_info->thread_id; + text_info.total_time = 0; + text_info.feature = thread_info->feature; + text_info.debuginfo = debuginfo; + text_info.c_handle = c_handle; + + stat(thread_info->input, &s_buf); + /* 目录处理 */ + if (S_ISDIR(s_buf.st_mode)) + { + memset(file_name, 0, 100 * 256); + read_file_list(thread_info->input, file_name); + + if (thread_info->file_type & pcap_type) + { + for ( i = 0; i < 100; i++) + { + if(file_name[i][0] == '\0') + break; + thread_info->input = file_name[i]; + c_pcap_prefix_handle(thread_info, debuginfo, c_handle); + } + }else + { + for ( i = 0; i < 100; i++) + { + if(file_name[i][0] == '\0') + break; + text_info.file_name = file_name[i]; + c_text_handle(&text_info, debuginfo); + } + } + }else + { + /* 文件处理 */ + if (thread_info->file_type & pcap_type) + { + c_pcap_prefix_handle(thread_info, debuginfo, c_handle); + }else + { + text_info.file_name = thread_info->input; + c_text_handle(&text_info, debuginfo); + } + } + + dlclose(lib_handle); + pthread_exit(debuginfo); +} + +void lua_pcap_handle(u_char *userarg, const struct pcap_pkthdr *pkthdr, const u_char *packet) +{ + char out[256] = {0}; + size_t out_len = 0; + size_t out_type = 0; + int ret = 0; + int i; + lua_pcap_info_t *pcap_info = (lua_pcap_info_t *)userarg; + char result[512]; + int debuginfo_len; + struct timespec time_start, time_end; + uint64_t time = 0; + + if ((pcap_info == NULL) || (pkthdr == NULL) || (packet == NULL)) + { + return ; + } + + memset(result, 0, sizeof(result)); + pcap_info->packet_num++; + if (pkthdr->caplen <= MAC_FRAME_HEADER_LEN + IP_HEADER_LEN + TCP_HEADER_LEN) + { + return ; + } + const u_char *tcp_payload = packet + MAC_FRAME_HEADER_LEN + IP_HEADER_LEN + TCP_HEADER_LEN; + int tcp_payload_len = pkthdr->caplen - MAC_FRAME_HEADER_LEN - IP_HEADER_LEN - TCP_HEADER_LEN; + + while (lua_pcap_flag[pcap_info->thread_id] != 3) + { + for (i = 0; i < TSG_LUA_LOOP_TIMES; i++) + { + ret = tsg_lua_cache_exec(pcap_info->L, pcap_info->script_id, (const char *)tcp_payload, tcp_payload_len, out, &out_len, &out_type); + if (ret < 0) + { + sprintf(result, "failed"); + pthread_exit(pcap_info->debuginfo); + } + } + lua_pcap_flag[pcap_info->thread_id]++; + } + + clock_gettime(CLOCK_MONOTONIC, &time_start); + for (i = 0; i < TSG_LUA_LOOP_TIMES; i++) + { + ret = tsg_lua_cache_exec(pcap_info->L, pcap_info->script_id, (const char *)tcp_payload, tcp_payload_len, out, &out_len, &out_type); + if (ret < 0) + { + sprintf(result, "failed"); + pthread_exit(pcap_info->debuginfo); + } + } + clock_gettime(CLOCK_MONOTONIC, &time_end); + time += calc_time(time_start, time_end); + time /= TSG_LUA_LOOP_TIMES; + pcap_info->total_time += time; + + switch(out_type) + { + case STRING: + snprintf(result, out_len + 1, "%s", out); + break; + case BOOLEAN: + sprintf(result, "%s", out[0] ? "true":"false"); + break; + case INTEGER: + sprintf(result, "%ld", *(uint64_t *)out); + break; + default: + break; + } + debuginfo_len = strlen(pcap_info->debuginfo); + if (debuginfo_len < 9500) + { + sprintf(&pcap_info->debuginfo[debuginfo_len], "%-10s%-10ld%-11d%-20s%-20s%-20ld%-20ld\n", + "LUA", pcap_info->thread_id, pcap_info->packet_num, pcap_info->feature, result, time, pcap_info->total_time); + } + return ; +} +static void lua_pcap_prefix_handle(lua_thread_info_t *thread_info, char *debuginfo, tsg_lua_handle L, size_t script_id) +{ + char ebuf[PCAP_ERRBUF_SIZE]; + lua_pcap_info_t pcap_info; + pcap_t *pcap_handle; + + if ((thread_info == NULL) || (debuginfo == NULL) || (script_id < 1)) + { + return ; + } + /* pcap 文件处理 */ + if (thread_info->file_type & pcap_type) + { + pcap_handle = pcap_open_offline(thread_info->input, ebuf); + if (pcap_handle == NULL) + { + printf("input is error\n"); + return ; + } + + pcap_info.L = L; + pcap_info.feature = thread_info->feature; + pcap_info.script_id = script_id; + pcap_info.debuginfo = debuginfo; + pcap_info.packet_num = 0; + pcap_info.total_time = 0; + pcap_info.thread_id = thread_info->thread_id; + + pcap_loop(pcap_handle, -1, lua_pcap_handle, (u_char *)&pcap_info); + pcap_close(pcap_handle); + + } + return ; +} + +static void lua_text_handle(lua_text_info_t *text_info, char *debuginfo, tsg_lua_handle lua) +{ + char buffer[1024 * 1024]; + size_t buffer_len; + char result[512]; + struct timespec time_start, time_end; + uint64_t time; + int i; + int ret; + size_t out_len = 0; + size_t out_type = 0; + char out[256] = {0}; + const char *file_name; + + if ((text_info == NULL) || (debuginfo == NULL)) + { + return ; + } + + /* 普通文件处理 */ + if (file_to_buffer(text_info->file_name, buffer, &buffer_len)) + { + return; + } + + while (lua_text_flag[text_info->thread_id] != 3) + { + for (i = 0; i < TSG_LUA_LOOP_TIMES; i++) + { + ret = tsg_lua_cache_exec(lua, text_info->script_id, (const char *)buffer, buffer_len, out, &out_len, &out_type); + if (ret < 0) + { + return; + } + } + lua_text_flag[text_info->thread_id]++; + } + + clock_gettime(CLOCK_MONOTONIC, &time_start); + for (i = 0; i < TSG_LUA_LOOP_TIMES; i ++) + { + ret = tsg_lua_cache_exec(lua, text_info->script_id, (const char *)buffer, buffer_len, out, &out_len, &out_type); + if (ret < 0) + { + return; + } + } + clock_gettime(CLOCK_MONOTONIC, &time_end); + time = calc_time(time_start, time_end); + time /= TSG_LUA_LOOP_TIMES; + text_info->total_time += time; + + switch(out_type) + { + case STRING: + snprintf(result, out_len + 1, "%s", out); + break; + case BOOLEAN: + sprintf(result, "%s", out[0] ? "true":"false"); + break; + case INTEGER: + sprintf(result, "%ld", *(uint64_t *)out); + break; + default: + break; + } + file_name = (const char *)memrchr(text_info->file_name, '/', strlen(text_info->file_name)); + if (file_name == NULL) + { + file_name = text_info->file_name; + }else + { + file_name++; + } + + sprintf(&debuginfo[strlen(debuginfo)], "%-10s%-10ld%-20s%-20s%-20s%-20ld%-20ld\n", + "lua", text_info->thread_id, file_name, text_info->feature, result, time, text_info->total_time); + + return ; +} + +static void *lua_file_handle(void *ptr) +{ + size_t script_id; + char script[4096]; + size_t script_len; + tsg_lua_handle lua; + char *debuginfo = NULL; + lua_thread_info_t * thread_info = (lua_thread_info_t *)ptr; + uint32_t i; + char result[512]; + lua_text_info_t text_info; + struct stat s_buf; + char file_name[100][256]; + + debuginfo = (char *)tc_malloc(10240); + if (debuginfo == NULL) + { + perror(" "); + pthread_exit(NULL); + } + memset(debuginfo, 0, 10240); + memset(result, 0, sizeof(result)); + + lua = tsg_lua_vm_create(); + if (lua == NULL) + { + pthread_exit(debuginfo); + } + tsg_lua_identify(lua, &thread_info->thread_id); + if (file_to_buffer(thread_info->script, script, &script_len)) + { + pthread_exit(debuginfo); + } + script_id = tsg_lua_cache_script(lua, script, script_len); + if (script_id < 1) + { + pthread_exit(debuginfo); + } + + text_info.L = lua; + text_info.thread_id = thread_info->thread_id; + text_info.script_id = script_id; + text_info.total_time = 0; + text_info.feature = thread_info->feature; + text_info.debuginfo = debuginfo; + + stat(thread_info->input, &s_buf); + /* 目录处理 */ + if (S_ISDIR(s_buf.st_mode)) + { + memset(file_name, 0, 100 * 256); + read_file_list(thread_info->input, file_name); + + if (thread_info->file_type & pcap_type) + { + for ( i = 0; i < 100; i++) + { + if(file_name[i][0] == '\0') + break; + thread_info->input = file_name[i]; + lua_pcap_prefix_handle(thread_info, debuginfo, lua, script_id); + } + }else + { + for ( i = 0; i < 100; i++) + { + if(file_name[i][0] == '\0') + break; + text_info.file_name = file_name[i]; + lua_text_handle(&text_info, debuginfo, lua); + } + } + }else + { + /* 文件处理 */ + if (thread_info->file_type & pcap_type) + { + lua_pcap_prefix_handle(thread_info, debuginfo, lua, script_id); + }else + { + text_info.file_name = thread_info->input; + lua_text_handle(&text_info, debuginfo, lua); + } + } + pthread_exit(debuginfo); +} + +int main(int argc, char *argv[]) +{ + conf_t conf; + int ret; + char conf_path[128]; + pthread_t thread[MAX_THREAD_NUM] = {0}; + pthread_attr_t attr[MAX_THREAD_NUM] = {0}; + uint32_t thread_num; + int ch; + int buf_len; + lua_thread_info_t lua_thread_info[MAX_THREAD_NUM]; + c_thread_info_t c_thread_info[MAX_THREAD_NUM]; + char *retval; + cpu_set_t mask; + FILE *log = NULL; + char log_name[256]; + const char *log_prefix = "./log/"; + time_t timep; + + memset(&conf, 0, sizeof(conf_t)); + strcpy(conf_path, "./conf/default.conf"); + while((ch = getopt(argc, argv, "t:f:i:s:l:c:h")) != -1) + { + switch(ch) + { + case 't': + conf.thread_num = atoi(optarg); + if (conf.thread_num >= MAX_THREAD_NUM) + { + printf("MAX_THREAD_NUM is %d\n",MAX_THREAD_NUM - 1); + conf.thread_num = MAX_THREAD_NUM; + } + conf.complete |= THREAD_NUM_COMPLETE; + break; + case 'f': + buf_len = MIN(1024, strlen(optarg)); + strncpy((char *)conf.feature, optarg, buf_len); + conf.complete |= FEATURE_COMPLETE; + break; + case 'i': + buf_len = MIN(127, strlen(optarg)); + strncpy(conf.input, optarg, buf_len); + conf.input[buf_len] = '\0'; + conf.complete |= INPUT_COMPLETE; + break; + case 's': + buf_len = MIN(127, strlen(optarg)); + strncpy(conf.script, optarg, buf_len); + conf.script[buf_len] = '\0'; + conf.complete |= SCRIPT_COMPLETE; + break; + case 'l': + buf_len = MIN(127, strlen(optarg)); + strncpy(conf.lib, optarg, buf_len); + conf.lib[buf_len] = '\0'; + conf.complete |= LIB_COMPLETE; + break; + case 'c': + buf_len = MIN(127, strlen(optarg)); + strncpy(conf_path, optarg, buf_len); + conf_path[buf_len] = '\0'; + break; + case 'h': + default: + printf("usage: multithread \n[-t set thread num] \n[-f set feature] \n" + "[-i set input] \n[-s set script] \n[-l set library] \n" + "[-c set conf_path] \n[-h show help info]\n"); + return -1; + break; + } + } + + ret = init_conf(conf_path, &conf); + if (ret != 0) + { + return -1; + } + + strcpy(log_name, log_prefix); + time(&timep); + strftime(&log_name[strlen(log_prefix)], sizeof(log_name) - strlen(log_prefix),"%Y%m%d%H%M%S.log", localtime(&timep)); + log = fopen(log_name, "a+"); + if (log == NULL) + { + perror(log_name); + return -1; + } + + /* 识别文件类型 */ + + printf("\n==============================================================================================================================\n"); + if (conf.file_type & pcap_type) + { + printf("%-10s%-10s%-11s%-20s%-20s%-20s%-20s\n", "C or LUA", "thread_id", "packet_num", "feature", "result", "time", "total_time"); + }else + { + printf("%-10s%-10s%-20s%-20s%-20s%-20s\n", "C or LUA", "thread_id", "file_name", "feature", "result", "time"); + } +#if 1 + /* c function */ + for ( thread_num = 0; thread_num < conf.thread_num; thread_num++ ) + { + c_thread_info[thread_num].lib = conf.lib; + c_thread_info[thread_num].input = conf.input; + c_thread_info[thread_num].feature = conf.feature; + c_thread_info[thread_num].thread_id = thread_num; + c_thread_info[thread_num].file_type = conf.file_type; + pthread_attr_init(&attr[thread_num]); + if(pthread_create(&thread[thread_num], &attr[thread_num], c_file_handle, (void *)&c_thread_info[thread_num])) + { + perror(" "); + fclose(log); + return -1; + } + + CPU_ZERO(&mask); + CPU_SET(thread_num, &mask); + if (pthread_setaffinity_np(thread[thread_num], sizeof(mask), &mask) != 0) + { + printf("warning:could not set CPU affinity, continuing...\n"); + } + } + + for (thread_num = 0; thread_num < conf.thread_num; thread_num++) + { + pthread_join(thread[thread_num], (void **)&retval); + if (retval) + { + printf("%s", retval); + fwrite(retval, strlen(retval), 1, log); + tc_free(retval); + } + } +#endif + /* lua function */ + for (thread_num = 0; thread_num < conf.thread_num; thread_num++) + { + lua_thread_info[thread_num].script = conf.script; + lua_thread_info[thread_num].input = conf.input; + lua_thread_info[thread_num].feature = conf.feature; + lua_thread_info[thread_num].thread_id = thread_num; + lua_thread_info[thread_num].file_type = conf.file_type; + pthread_attr_init(&attr[thread_num]); + if(pthread_create(&thread[thread_num], &attr[thread_num], lua_file_handle, (void *)&lua_thread_info[thread_num]) != 0) + { + perror(" "); + fclose(log); + return -1; + } + + CPU_ZERO(&mask); + CPU_SET(thread_num, &mask); + if (pthread_setaffinity_np(thread[thread_num], sizeof(mask), &mask) != 0) + { + printf("warning:could not set CPU affinity, continuing...\n"); + } + } + + for (thread_num = 0; thread_num < conf.thread_num; thread_num++) + { + pthread_join(thread[thread_num], (void **)&retval); + if (retval) + { + printf("%s", retval); + fwrite(retval, strlen(retval), 1, log); + tc_free(retval); + } + } + + fclose(log); + + return 0; +} diff --git a/example/luatest/pcap/no_weixinnum_10.pcap b/example/luatest/pcap/no_weixinnum_10.pcap Binary files differnew file mode 100644 index 0000000..7c72a6b --- /dev/null +++ b/example/luatest/pcap/no_weixinnum_10.pcap diff --git a/example/luatest/pcap/no_weixinnum_6.pcap b/example/luatest/pcap/no_weixinnum_6.pcap Binary files differnew file mode 100644 index 0000000..52d6fc7 --- /dev/null +++ b/example/luatest/pcap/no_weixinnum_6.pcap diff --git a/example/luatest/pcap/no_weixinnum_9.pcap b/example/luatest/pcap/no_weixinnum_9.pcap Binary files differnew file mode 100644 index 0000000..957a836 --- /dev/null +++ b/example/luatest/pcap/no_weixinnum_9.pcap diff --git a/example/luatest/pcap/test.pcap b/example/luatest/pcap/test.pcap Binary files differnew file mode 100644 index 0000000..5d9aacf --- /dev/null +++ b/example/luatest/pcap/test.pcap diff --git a/example/luatest/pcap/weixin_id_ios_20200423_004.pcap b/example/luatest/pcap/weixin_id_ios_20200423_004.pcap Binary files differnew file mode 100644 index 0000000..bd42bbc --- /dev/null +++ b/example/luatest/pcap/weixin_id_ios_20200423_004.pcap diff --git a/example/luatest/script/cfunc_handle_weixinnum.lua b/example/luatest/script/cfunc_handle_weixinnum.lua new file mode 100644 index 0000000..3667c7d --- /dev/null +++ b/example/luatest/script/cfunc_handle_weixinnum.lua @@ -0,0 +1,43 @@ + +local data = tsg.data +local data_len = string.len(tsg.data) +local feature = "weixinnum" +local feature_len = string.len(feature); +local max_weixinnum_len = 12 +local offset = 4 +local locate = 0 + +-- 查找字符串weixinnum位置 +local _start, _end = tsg.memmem(data, data_len, feature, feature_len) +if not _end then + return 1, false +end + +-- 获取weixinnum数值字符串长度 +if ((string.byte(data, _end + 1) ~= 0) or (string.byte(data, _end + 2) ~=0 ) or (string.byte(data, _end + 3) ~= 0)) then + return 1, false +end +local weixinnum_len = string.byte(data, _end + offset) +if not weixinnum_len then + return 1, false +end +locate = _end + offset + +-- 判断weixinnum数值字符串长度的合法性 +if weixinnum_len > data_len - _end - 4 or weixinnum_len > max_weixinnum_len then + return 1, false +end + +-- 获取weixinnum数值字符串 +local weixinnum = string.sub(data, locate + 1, locate + weixinnum_len) +-- weixinnum数值字符串是否可以转换为数字 +if tonumber(weixinnum) then + return weixinnum_len, weixinnum +else + return 1, false +end +--[[ +--print(_start, _end) +print(string.byte(data, _end)) +return 1, true +]] diff --git a/example/luatest/script/ffi_handle_weixinnum.lua b/example/luatest/script/ffi_handle_weixinnum.lua new file mode 100644 index 0000000..a730f42 --- /dev/null +++ b/example/luatest/script/ffi_handle_weixinnum.lua @@ -0,0 +1,35 @@ +local data = tsg.data +local data_len = string.len(data) +local feature = "weixinnum" +local feature_len = string.len(feature) +local max_weixinnum_len = 12 +local C = tsg.C +local ffi = tsg.ffi + +-- 查找weixinnum字符串位置 +local weixinnum_name = C.memmem(data, data_len, feature, feature_len) +if weixinnum_name == nil then + return 1, false +end + +-- 获取weixinnum数值字符串长度 +local locate = weixinnum_name + feature_len +if (locate[0] ~= 0) or (locate[1] ~= 0) or (locate[2] ~= 0) then + return 1, false +end +local weixinnum_len = locate[3] +if not weixinnum_len then + return 1, false +end +if weixinnum_len > max_weixinnum_len then + return 1, false +end +-- 获取weixinnum数值字符串 +locate = locate + 4 +local weixinnum = ffi.string(locate) +-- weixinnum数值字符串是否可以转换为数字 +if tonumber(weixinnum) then + return weixinnum_len, weixinnum +else + return 1, false +end diff --git a/example/luatest/script/handle_fasta_count.lua b/example/luatest/script/handle_fasta_count.lua new file mode 100644 index 0000000..219b681 --- /dev/null +++ b/example/luatest/script/handle_fasta_count.lua @@ -0,0 +1,17 @@ +local data = tsg.data +local data_len = string.len(data) +local feature = "hAATCGCTT" + +local _index +local _end = 1 +local cnt = 0 +while true do + _index, _end = string.find(data, feature, _end, -1) + if not _end then + break; + end + cnt = cnt + 1 +end + +local result = string.format("count:%d", cnt) +return string.len(result), result diff --git a/example/luatest/script/handle_fasta_find.lua b/example/luatest/script/handle_fasta_find.lua new file mode 100644 index 0000000..971144c --- /dev/null +++ b/example/luatest/script/handle_fasta_find.lua @@ -0,0 +1,13 @@ +local data = tsg.data +local data_len = string.len(data) +local feature = "GGsCGG" + +local result +local _index, _end = string.find(data, feature) +if not _index then + result = "not find" + return string.len(result), result +else + result = "find" + return string.len(result), result +end diff --git a/example/luatest/script/handle_weixinnum.lua b/example/luatest/script/handle_weixinnum.lua new file mode 100644 index 0000000..971845e --- /dev/null +++ b/example/luatest/script/handle_weixinnum.lua @@ -0,0 +1,45 @@ +--------------------------------------------------------------------------------------------- +-- 脚本功能：在数据中查找符合特征的weixinnum -- +-- 特征如下： -- +-- 00 00 00 09 | 77 65 69 78 69 6e 6d 75 2d | 00 00 00 0a | 31 39 35 35 37 34 30 37 38 30 -- +-- weixinnum | w e i x i n n u m | weixinnum | 1 9 5 5 7 4 0 7 8 0 -- +-- 字符串长度 | 字符串 | 数值长度 | 字符串 -- +--------------------------------------------------------------------------------------------- + +local data = tsg.data --tsg.data 获取待处理数据 +local data_len = string.len(tsg.data) +local feature = "weixinnum" --待识别的特征 +local max_weixinnum_len = 12 +local offset = 4 -- 字符串长度所占位数 +local locate = 0 -- 字符串中当前正在处理的位置 + +-- 查找字符串weixinnum位置 +local _start, _end = string.find(data, feature) +if not _end then + return 1, false +end + +-- 获取weixinnum数值字符串长度 +-- weixinnum数值字符串长度不超过12，所以前三位必须为0 +if ((string.byte(data, _end + 1) ~= 0) or (string.byte(data, _end + 2) ~=0 ) or (string.byte(data, _end + 3) ~= 0)) then + return 1, false +end +local weixinnum_len = string.byte(data, _end + offset) +if not weixinnum_len then + return 1, false +end +locate = _end + offset + +-- 判断weixinnum数值字符串长度的合法性 +if weixinnum_len > data_len - _end - offset or weixinnum_len > max_weixinnum_len then + return 1, false +end + +-- 获取weixinnum数值字符串 +local weixinnum = string.sub(data, locate + 1, locate + weixinnum_len) +-- weixinnum数值字符串是否可以转换为数字 +if tonumber(weixinnum) then + return weixinnum_len, weixinnum +else + return 1, false +end diff --git a/example/luatest/tags b/example/luatest/tags new file mode 100644 index 0000000..5fd17d1 --- /dev/null +++ b/example/luatest/tags @@ -0,0 +1,913 @@ +!_TAG_FILE_FORMAT 2 /extended format; --format=1 will not append ;" to lines/ +!_TAG_FILE_SORTED 1 /0=unsorted, 1=sorted, 2=foldcase/ +!_TAG_PROGRAM_AUTHOR Darren Hiebert /[email protected]/ +!_TAG_PROGRAM_NAME Exuberant Ctags // +!_TAG_PROGRAM_URL http://ctags.sourceforge.net /official site/ 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